Gene detail

Detail information of GWHGAAZE028296

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17827.1	0	unnamed protein product [Coffea canephora]
COG	YP_001660791.1	1E-12	apoptotic protease-activating factor 1 like
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|A0A068VB70\|A0A068VB70_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_181 {ECO:0000313\|EMBL:CDP17827.1}
TAIR10	AT3G14470.1	3E-173	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	49880781	49884767	+
GWHAAZE00000008	mRNA	49880781	49884767	+
GWHAAZE00000008	exon	49880781	49884767	+
GWHAAZE00000008	CDS	49880781	49884767	+

Transcript Sequence
>GWHTAAZE028330 ATGGCAGTAATAGAAATCTTTGTCTCGGCATTTGTTACTGTTCTGATCGACAAGTTAGCCTCTTCCATGCTGTTGAAAATGGCTCGCCTCCAGGGAATTGCCACTCAACTCAAGAAGTGGAGCTACACTTTAGCGATTATTCAAGCTGTGCTAAATGACGCTGAGGAGAAACAGACCTCAGAAAAATCTGTACAGATGTGGCTCGACGATCTCCAACATTTGGCTTACGAACTCGACGACATACTCGACGATTTGCTCACCGAAGCTTTGCGTCGTGAGTCTGTTAAGGCAGCTCAAGAAGCCAGCACCAGTGAAGTAAGGCGCCTCATCCCTACTTGTAGTACTACTTTTCCTAGTCCTAGTGCTTTAAAATTTGATTACAACATGGGATCCAAGTTAGCGGATATCACTCAAAGATTGCAAGATCTTTCAACCCGGCAAAACGATTTGGGGTTGACAAAGAATGCCATGGGCATCAAGTCATACGGAATCGGAGAAAGAGAAACCAGTTCCTTGGTGATTGAATCTGATGTTTACGGCCGTGAAAATGATAAAAAGGAAGTAATCAAGTTGTTGTTGAGAGACGAAACACACGCCGGTGAAATCTCTGTAATTCCTATAGTTGGTATGGGCGGTGTTGGGAAAACCACCATTGCTCAACTTGTTTACAATGATGATGAAGAGCTGAAGGGCCGGTTTGATCTCAAGATATGGGTATGTGTTTCTGATGAGTTTGACGTCTTCCTGATAACCAAGCGAATTCTTGGGGCTAAGGCCTTGGACTTAAACGAGGCTCAAGAGAAACTAAAGCAGAAACTTTCCAACAGAAAATTTCTTCTTGTTTTAGACGATGTCTGGAACGAAGACTACGGAAAATGGGATCAACTCCGTACTCCTTTTCTGGTTGGGGCACCTGGCAGTGTAGTTATTGTCACAACTCGGAACGAGAAGGTGGCGTCAACAATGGGCAAGGTTCGAGGCAGTGATCAAATGTATCGTCTAGACAAGCTTTCAGATGATATTTGCCTATCTATATTAGCTCGACATGCATTATCTACAAGAGATTTTGAACAGAATCCCAACTTTAAAATCGTCGCTGAGAAACTTGCCAGAAAGTGTAAAGGCTTACCCTTGGCAGCAAAGGCAATTGGAGGCCTCTTGCGCACAAGTGGAACCCCAAATGAGTGGGAAGATATATTAAACAGCAAGATTTGGGAATTGCCAGAACAATCGACTGGCATTCTTCCAGCTTTGAGATTAAGCTATCGTCATCTACCTCCTCATCTAAAGCGTTTGTTTGCGTATTGCTCTATATTTCCGACAGACTATGTCTTTGACAAATACGAGCTAGTTTTGTTATGGATGGCAGAAGGCTTTTTGCAGCAGTCAGAAGGAAAGAAGAGAATGGAAGAGATGGGTTTTCTATATTTCAATGAGCTTGTATCGCGGTCCTTTTTTCAACCTTTAAGCGGCAGCGAGGAATCGCTGTTTGTGATGCATGACCTAATGAATGACCTAGCTCAGTTTGTTGCCAAAGGAATATGCTATAGGGTGGAAGATGAAATGAAGTGCAATGGACAACATATAGTTTTTGAAAAGGTTCGCCACTCATCATACATTCGCCAGCAATATGGTGTCTTTTATAAATTCAAGAACTATCACAAACTTCTTACTTTGCGGACTTTCTTACCTCTACCGGTTCATGAGGCAAAAGATTGGCTGAAGTTCTACTTGAGCAGTAGGGTTGTTAATGAGTTGTTACCTGAACTCCGGTGCTTACGGGTTTTGTCTTTGAGTGGTTATTCCATAACCGAGCTTTCAAACTCAATTGGTGAGTTGAAGCACCTTCGGTATCTTAACTTATCCAATACCCTCATCACACATTTGCCAGAGTCCGTGAGTGATCTCTACAATTTACAGACGTTATCATTACGTAATTGCAGCAAACTATGCAAGTTACCGACAAGAATTGGAGAATTAGTTAATTTGCGGCATCTTGACATCGGTCATACTGACAAATTATTAAAAATGCCTTCTCAGATTTGTAAGTTAACTAGTTTGCAGACATTGTCAAAAATTATTCTAGATGAGAATAATACTTTGGCGGTAACTGAGTTGAGGGGATTGCCTGATCTCCGGGGAACACTTGCCATTATTGGGTTACACAATGTGATGAATGCTCAAGATGCAGGGGAGGCCAATCTTTTGTCTAAGCAAGGCCTCAAGGACTTGACATTGACCTGGAGCAGCGATTTTGATGATTCTCGAAGAATGGAGACTCGAGAGTACGAAGTGCTTGAATTTCTAGAACCATGTACAAAATTGACAAAGTTGAAAATCAAGTTCTATGGGGGCATTGAATTTCCTAGCTGGGTATGCGATCCTTCATTCGTTGATATAACAAATCTAACACTCAGTGGGTGTGTAAGGGTTGCATCCTTACCATCACTTGGGCATCTACCCTCACTCAAGGAGTTGTTCATCCAAGGCATGGCTGGCGTGAAAAATGTGGGCGACGAGTTGTACGGAGTTGGTCATGCGGTTGCATTCCAATCACTTGAAACTCTCATGTTTGAGAACATGGTGGGTTGGGAGGAATGGTCTTTCAATTTGGCCAATATTGATGACTGTGTTGGTGCGTTTCCTCGACTTCACAACCTTACGATATGTGATTGTCCTGTGTTGGTCAAGATTTCACTTCCTAGTCTTCCGTCTCTTCGGGTTTTAGATATAAGAAGATGTGATGAGGTTGTTCTTAGACGTATAGTTAGTGTCGCATCTCTTACTACCATAACGATGGAAGGGATCCTTGGGCTTTCGAAGCTGCACGAAGGGGTTGTACAATCCCTGGGAGAACTTTGCCATCTTATAATTCTAAGATGTGATGAGCTGCGGTATTTGTGGGAAGAAGAAGAATCCTCTTGTCAAAAGCTCGGAAATCTGGTTGATCTATATTTTGATATGTGCTGTAAGCTTGAGAAGTTGCCAGATCTTGAGAGTTGCCTCACGTCTCTCAAGAAATTAAACATCTGCAATTGCCCGAGACTACAGTCCTTGCAAACATCAAAAAATTTGCCAACAAAAGGAAAAGATTTGATCGAAAGCAATAGCAATAACCCCGTGGAAAGTTATTCTCATCTTGCGAGTTTAACTATTAAGTGTTGTGAATCTTTGACATGCTTTCTACCAGGTCATAATCTACCCACCACCCTCAAATATCTTGATATATATTCATACGGTAATATGGAGCCAGATTCAGAGAACTTTTGGTTACTCAACGGTAGTAGTATGCCATCATCACTTGAAACAATTCGTATCAGCAACTGGGTGAAGCTGGCATCCTTACCTCGTTGCTTGTTCAAATTCATTCACCTTACCAATTTATTGTTAATTGGCTGTATGGGTCTCGAGTCATTTCTGGGAAGAGGTTTGCCTCCCAACTTGAGAAGACTTGCAATACGTAACTGCGAGAATCTGAAATATTTGCCTGATGATCAGATGCAAAGCCTCACGTCTCTGGTAAGAGTTGAAGTATCGGGCTGTCCATGTCTCGAATCCTTTCCTCAAGGGCGTTGGCCTCCCAACCTAGAAGTACTTTCGATCGGGAACATAAAGAAGCAGCCCATCTCAAAGTGGGACCTACATAGGCTCCCAACGTCTCTTGTTGATTTAAGCATTTACGGCGATATTCCAGAGCTGACGTCATTTTCGGGTGTGGGTATTAAACTTCCTACATCTCTAACCTCACTTGCAATCAATGGTCTCCAGAGTATTGAATCCCTCTCCATGGGCCTTGAGAACCTCACCTCACTTCAAAAGCTCTGGATACGTAATTGTCCTAAGTTTCAATCTTTGCCAGATACATTGCTTCCAACACTTTCAAGTCTTGTTATCTGGAACTGCCCACTCATAGAAGAACGGTGTTTAAAGGAGAAAAGAATATCCCACATCCCTCGTGTGGAGATAGACTACAAATTAATCCAGTAG

Network for GWHGAAZE028296

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0082

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18052.2	Rx_N	11	97	7.30E-23
PF00931.23	NB-ARC	182	401	3.30E-45
PF13855.7	LRR_8	593	647	1.00E-06

Protein Sequence

>GWHPAAZE028314
MAVIEIFVSAFVTVLIDKLASSMLLKMARLQGIATQLKKWSYTLAIIQAVLNDAEEKQTSEKSVQMWLDDLQHLAYELDDILDDLLTEALRRESVKAAQEASTSEVRRLIPTCSTTFPSPSALKFDYNMGSKLADITQRLQDLSTRQNDLGLTKNAMGIKSYGIGERETSSLVIESDVYGRENDKKEVIKLLLRDETHAGEISVIPIVGMGGVGKTTIAQLVYNDDEELKGRFDLKIWVCVSDEFDVFLITKRILGAKALDLNEAQEKLKQKLSNRKFLLVLDDVWNEDYGKWDQLRTPFLVGAPGSVVIVTTRNEKVASTMGKVRGSDQMYRLDKLSDDICLSILARHALSTRDFEQNPNFKIVAEKLARKCKGLPLAAKAIGGLLRTSGTPNEWEDILNSKIWELPEQSTGILPALRLSYRHLPPHLKRLFAYCSIFPTDYVFDKYELVLLWMAEGFLQQSEGKKRMEEMGFLYFNELVSRSFFQPLSGSEESLFVMHDLMNDLAQFVAKGICYRVEDEMKCNGQHIVFEKVRHSSYIRQQYGVFYKFKNYHKLLTLRTFLPLPVHEAKDWLKFYLSSRVVNELLPELRCLRVLSLSGYSITELSNSIGELKHLRYLNLSNTLITHLPESVSDLYNLQTLSLRNCSKLCKLPTRIGELVNLRHLDIGHTDKLLKMPSQICKLTSLQTLSKIILDENNTLAVTELRGLPDLRGTLAIIGLHNVMNAQDAGEANLLSKQGLKDLTLTWSSDFDDSRRMETREYEVLEFLEPCTKLTKLKIKFYGGIEFPSWVCDPSFVDITNLTLSGCVRVASLPSLGHLPSLKELFIQGMAGVKNVGDELYGVGHAVAFQSLETLMFENMVGWEEWSFNLANIDDCVGAFPRLHNLTICDCPVLVKISLPSLPSLRVLDIRRCDEVVLRRIVSVASLTTITMEGILGLSKLHEGVVQSLGELCHLIILRCDELRYLWEEEESSCQKLGNLVDLYFDMCCKLEKLPDLESCLTSLKKLNICNCPRLQSLQTSKNLPTKGKDLIESNSNNPVESYSHLASLTIKCCESLTCFLPGHNLPTTLKYLDIYSYGNMEPDSENFWLLNGSSMPSSLETIRISNWVKLASLPRCLFKFIHLTNLLLIGCMGLESFLGRGLPPNLRRLAIRNCENLKYLPDDQMQSLTSLVRVEVSGCPCLESFPQGRWPPNLEVLSIGNIKKQPISKWDLHRLPTSLVDLSIYGDIPELTSFSGVGIKLPTSLTSLAINGLQSIESLSMGLENLTSLQKLWIRNCPKFQSLPDTLLPTLSSLVIWNCPLIEERCLKEKRISHIPRVEIDYKLIQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043531	molecular_function	ADP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.111
	SRR3591706	second leaf	1.251
	SRR3591707	mature leaf	1.656
	SRR3591708	Shoot apex	1.379
	SRR3591709	Stem	2.366
	SRR3591710	White floral bud	0.065
	SRR3591711	White flower	0.106
	SRR3591712	Green floral bud	0.059
	SRR3591713	Yellow flower	0.039
SRP173429	SRR8316895	Juvenile bud stage	0.077
	SRR8316896	Juvenile bud stage	0.023
	SRR8316897	Juvenile bud stage	0.194
	SRR8316894	Third green stage	0.027
	SRR8316900	Third green stage	0.075
	SRR8316901	Third green stage	0.054
	SRR8316898	Complete white stage	0.021
	SRR8316899	Complete white stage	0.036
	SRR8316903	Complete white stage	0.049
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.006
	SRR8316905	Silver flowering stage	0.003
	SRR8316906	Gold flowering stage	0.003
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.028
SRP132670	SRR6706286	Control	0.029
	SRR6706287	Light intensity 50%	0.026
	SRR6706288	Light intensity 20%	0.075
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.009
	CNS0095593	Slightly white alabastrum(diploid) 2	0.141
	CNS0095594	Slightly white alabastrum(diploid) 3	0.055
	CNS0095595	Whole white alabastrum(diploid) 2	0.103
	CNS0095596	Whole white alabastrum(diploid) 3	0.066
	CNS0095597	Whole white alabastrum(diploid) 4	0.034
	CNS0095598	Silvery flower (diploied) 1	0.877
	CNS0095599	Silvery flower (diploied) 2	0.489
	CNS0095600	Silvery flower (diploied) 3	0.139
	CNS0095601	Golden flower (diploid) 1	0.197
	CNS0095602	Golden flower (diploid) 2	0.284
	CNS0095603	Golden flower (diploid) 3	0.225
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.483
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.054
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.068
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.160
	CNS0095610	Silvery flower (tetraploid) 1	0.215
	CNS0095611	Silvery flower (tetraploid) 2	0.200
	CNS0095612	Silvery flower (tetraploid) 3	0.163
	CNS0095613	Golden flower (tetraploid) 1	0.199
	CNS0095614	Golden flower (tetraploid) 2	0.195
	CNS0095615	Golden flower (tetraploid) 3	0.129
CRA001975	CRR073297	Stem 1	0.101
	CRR073298	Stem 2	0.030
	CRR073299	Stem 3	0.002
	CRR073300	Leaf 1	0.015
	CRR073301	Leaf 2	0.044
	CRR073302	Leaf 3	0.047
	CRR073303	Juvenile bud 1	0.010
	CRR073304	Juvenile bud 2	0.105
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.095
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.018
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.188
	CRR073316	Gold flowering 2	0.192
	CRR073317	Gold flowering 3	0.480
	CRR073318	Tawny withering 1	1.300
	CRR073319	Tawny withering 2	0.687
	CRR073320	Tawny withering 3	1.380