Detail information of GWHGAAZE028335


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002324777.12.19247E-40PHD finger family protein [Populus trichocarpa]
Swissprottr|Q9M2B4|ALFL3_ARATH2E-30PHD finger protein ALFIN-LIKE 3, N-terminally processed
trEMBLtr|B9IKC9|B9IKC9_POPTR8E-41PHD finger family protein {ECO:0000313|EMBL:EEF03342.1}
TAIR10AT5G20510.11E-22alfin-like 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5136415351365106-
GWHAAZE00000008mRNA5136415351365106-
GWHAAZE00000008exon5136415351364428-
GWHAAZE00000008exon5136504451365106-
GWHAAZE00000008CDS5136504451365106-
GWHAAZE00000008CDS5136415351364428-
Transcript Sequence

Network for GWHGAAZE028335

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0070


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00628.30PHD57963.20E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.778
SRR3591706second leaf3.381
SRR3591707mature leaf2.379
SRR3591708Shoot apex3.648
SRR3591709Stem10.851
SRR3591710White floral bud0.950
SRR3591711White flower0.478
SRR3591712Green floral bud0.525
SRR3591713Yellow flower0.405
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.041
SRR8316897Juvenile bud stage 0.741
SRR8316894Third green stage 0.057
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.046
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.149
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.518
SRP132670SRR6706286Control0.060
SRR6706287Light intensity 50%0.039
SRR6706288Light intensity 20%0.170
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.174
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.387
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.113
CNS0095598Silvery flower (diploied) 10.790
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.000
CNS0095604Slightly white alabastrum(tetraploid) 11.129
CNS0095605Slightly white alabastrum(tetraploid) 21.171
CNS0095606Slightly white alabastrum(tetraploid) 32.794
CNS0095607Whole white alabastrum(tetraploid) 12.540
CNS0095608Whole white alabastrum(tetraploid) 21.923
CNS0095609Whole white alabastrum(tetraploid) 31.493
CNS0095610Silvery flower (tetraploid) 10.944
CNS0095611Silvery flower (tetraploid) 20.299
CNS0095612Silvery flower (tetraploid) 31.626
CNS0095613Golden flower (tetraploid) 10.352
CNS0095614Golden flower (tetraploid) 21.104
CNS0095615Golden flower (tetraploid) 30.362
CRA001975CRR073297Stem 10.250
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.205
CRR073302Leaf 30.362
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.104
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.173
CRR073317Gold flowering 30.000
CRR073318Tawny withering 12.465
CRR073319Tawny withering 21.461
CRR073320Tawny withering 30.209