Gene detail

Detail information of GWHGAAZE028365

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011042443.1	2.2821E-158	PREDICTED: 3-ketoacyl-CoA synthase 19-like [Populus euphratica]
COG	YP_003716923.1	2E-15	naringenin-chalcone synthase
Swissprot	tr\|Q5XEP9\|KCS17_ARATH	2E-139	3-ketoacyl-CoA synthase 17
trEMBL	tr\|B9H8F7\|B9H8F7_POPTR	3E-157	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}
TAIR10	AT1G04220.1	4E-115	3-ketoacyl-CoA synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	53166306	53167709	+
GWHAAZE00000008	mRNA	53166306	53167709	+
GWHAAZE00000008	exon	53166306	53166514	+
GWHAAZE00000008	exon	53166605	53166716	+
GWHAAZE00000008	exon	53166903	53167709	+
GWHAAZE00000008	CDS	53166306	53166514	+
GWHAAZE00000008	CDS	53166605	53166716	+
GWHAAZE00000008	CDS	53166903	53167709	+

Transcript Sequence
>GWHTAAZE028399 ATGTGCACCAGAGAAAAGGTCGTGGACCAAATTACGAACTATGCAAATCTATCAAAAGATACGTCAGATTTTGTGAAGAAGATAATTAATGCAGGAGGACTAGGCGATTCCACGTACGTGCCAGAATCCTTACTGGCAGAGACTCCAAACCCGTGCATGAAAAATGCAAGGAGAGAGACCGAGATGGCTATGTTTAGATCCATAGACACCGTGGTAATTAATCACTACAAGCTTAAGGAGGATGTTATTAGCTATAACCTAACTGGGATGGGGTGCAGTGCAGGGCTTATGGCCATAGGCCTCGCGAAACAACTTCTCAAGGTGCATCCTAACGCCTATGCTCTAGTAGTGAGTACAGAGAACATTACCGAAAATGAATACAAGGGACAAGATCACCAAATGCTACTAATCAATTGCTTATTCCGTCTTGGTGGGGCTGCCATCCTCCTCTCAAATCGGCCATCTGATTGTTACTCATCGAAATACCAGCTTATCCACAGCGTCCAAACCCACACAGCAAGCTCTGACCTTTCCTACAACTGCATCAGGCGAGAAGAAGATGAAGGTGGACGGACAGGAGTAACCATCACAAAAGATCTTTTGGTAGCAGCAAATAGAGCCATAGAATCCAACATTACCACACTAGGTTCCCTAATCCTTCCTTTATCTGAAAAAGTTCGCTTTACCATGAACAATATTATAAGGAAACTCCACATTGGAAGGATCCAGCCGTACCTTCCAAAATTCAAAAAGGCCATTGATCACTTTTTCTCACATGTTGGGGGGAAACCAGTACTGGATGACCTACAGAGAAACTTAGGTTTCCTCGATGAGGATATGGAACCTTCTAGAATGGCGTTGCAAAGATTCGGTAATACTTCTAGTAGTTCAGTGTGGTATGCGCTGGCCTATGCCGAGGCAAAAGGGAGGATCAAGAAGGGGGATCGTGTGTGGCAGATTGCATTTGGGTCCGGGTTCAAGTGTAGCAGTGCATTTTGGCACGCCATGAGGAACATTGATTATGAGGAGACGAATCCATGGACAGCTGAGATTGATGGGTTTCCCGTAAACTTGGACAACCTTATTGGATCGTCCCCTTTTTTATTAGAACCATCTAAACAAACATAA

Network for GWHGAAZE028365

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0132

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08392.13	FAE1_CUT1_RppA	67	236	4.60E-70
PF08541.11	ACP_syn_III_C	251	333	1.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15397	KCS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fatty acid elongation	map00062
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0016747	molecular_function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.223
	SRR3591706	second leaf	0.230
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.111
	SRR3591709	Stem	0.657
	SRR3591710	White floral bud	577.444
	SRR3591711	White flower	137.627
	SRR3591712	Green floral bud	412.315
	SRR3591713	Yellow flower	65.972
SRP173429	SRR8316895	Juvenile bud stage	5.681
	SRR8316896	Juvenile bud stage	15.606
	SRR8316897	Juvenile bud stage	7.039
	SRR8316894	Third green stage	20.151
	SRR8316900	Third green stage	153.648
	SRR8316901	Third green stage	153.926
	SRR8316898	Complete white stage	329.593
	SRR8316899	Complete white stage	216.961
	SRR8316903	Complete white stage	339.703
	SRR8316902	Silver flowering stage	15.710
	SRR8316904	Silver flowering stage	30.897
	SRR8316905	Silver flowering stage	15.345
	SRR8316906	Gold flowering stage	10.232
	SRR8316907	Gold flowering stage	8.670
	SRR8316908	Gold flowering stage	8.605
SRP132670	SRR6706286	Control	223.359
	SRR6706287	Light intensity 50%	255.821
	SRR6706288	Light intensity 20%	267.423
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.964
	CNS0095593	Slightly white alabastrum(diploid) 2	8.398
	CNS0095594	Slightly white alabastrum(diploid) 3	6.270
	CNS0095595	Whole white alabastrum(diploid) 2	27.921
	CNS0095596	Whole white alabastrum(diploid) 3	35.584
	CNS0095597	Whole white alabastrum(diploid) 4	40.643
	CNS0095598	Silvery flower (diploied) 1	9.716
	CNS0095599	Silvery flower (diploied) 2	11.753
	CNS0095600	Silvery flower (diploied) 3	81.120
	CNS0095601	Golden flower (diploid) 1	2.353
	CNS0095602	Golden flower (diploid) 2	4.061
	CNS0095603	Golden flower (diploid) 3	3.860
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.283
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.942
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.076
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.130
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.309
	CNS0095609	Whole white alabastrum(tetraploid) 3	108.658
	CNS0095610	Silvery flower (tetraploid) 1	57.619
	CNS0095611	Silvery flower (tetraploid) 2	84.869
	CNS0095612	Silvery flower (tetraploid) 3	56.655
	CNS0095613	Golden flower (tetraploid) 1	6.416
	CNS0095614	Golden flower (tetraploid) 2	23.885
	CNS0095615	Golden flower (tetraploid) 3	10.705
CRA001975	CRR073297	Stem 1	21.133
	CRR073298	Stem 2	28.348
	CRR073299	Stem 3	21.669
	CRR073300	Leaf 1	156.237
	CRR073301	Leaf 2	132.555
	CRR073302	Leaf 3	143.982
	CRR073303	Juvenile bud 1	200.087
	CRR073304	Juvenile bud 2	1686.243
	CRR073305	Juvenile bud 3	141.476
	CRR073306	Third green 1	137.758
	CRR073307	Third green 2	163.454
	CRR073308	Third green 3	123.871
	CRR073309	Second white 1	10.621
	CRR073310	Second white 2	8.245
	CRR073311	Second white 3	1.869
	CRR073312	Silver flowering 1	0.442
	CRR073313	Silver flowering 2	0.875
	CRR073314	Silver flowering 3	0.415
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.068
	CRR073320	Tawny withering 3	0.000