Gene detail

Detail information of GWHGAAZE028380

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278880.2	0	PREDICTED: beta-fructofuranosidase, insoluble isoenzyme CWINV1 isoform X1 [Vitis vinifera]
COG	YP_008376381.1	5E-51	beta-fructosidase, family GH32
Swissprot	tr\|Q43866\|INV1_ARATH	0	Beta-fructofuranosidase, insoluble isoenzyme CWINV1 (Precursor)
trEMBL	tr\|F6H3N0\|F6H3N0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46563.1}
TAIR10	AT3G13790.2	0	Glycosyl hydrolases family 32 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	53637030	53643611	-
GWHAAZE00000008	mRNA	53637030	53643611	-
GWHAAZE00000008	exon	53643416	53643611	-
GWHAAZE00000008	exon	53641520	53642367	-
GWHAAZE00000008	exon	53640443	53640601	-
GWHAAZE00000008	exon	53639417	53639658	-
GWHAAZE00000008	exon	53638744	53638834	-
GWHAAZE00000008	exon	53637030	53637257	-
GWHAAZE00000008	CDS	53643416	53643611	-
GWHAAZE00000008	CDS	53641520	53642367	-
GWHAAZE00000008	CDS	53640443	53640601	-
GWHAAZE00000008	CDS	53639417	53639658	-
GWHAAZE00000008	CDS	53638744	53638834	-
GWHAAZE00000008	CDS	53637030	53637257	-

Transcript Sequence
>GWHTAAZE028414 ATGTACTTGGGAAAATGCAAAGAGAAAGAAGCTGTTATTTGGGTAGTACTCTTGCGCTTTGTTGCGGTACTTTTTAGCCATGGATTTGAAGTTGAAGCCTCTAATGAGGCATTCAAAAGTCACCAATCTCTTCTCCAAACAAAGCAGCCTTATAGGACTGGCTATCACTTTCAACCCATCAAGAACTGGATGAATGGACCAATGTACTACAAAGGAGTTTACCACCTATTCTACCAATACAATCCATATAGTGCTGAATGGGGAAACATTACATGGGCTCACTCAATATCATATGATCTCATCAACTGGGTCCATCTCGATGACGCAATTTCACCATCTGAACCATACGACATCAATGGTTGTTGGTCCGGCTCCGCCACGATCCTCCCAGGCGAAAAACCGGTCATTCTATACACCGGAGGTGACGCCCAGAAACATCAGGTCCAAAACCTAGCCGTGCCCAAAAATCTCTCGGACCCACATTTAAAAGAATGGGTAAAATTAACCAACAATCCTCTAATGTCTCCGGTTGGCATCAACCCACATAATTTCCGAGACCCCACAACTGGCTGGCTTGGACCGGACAAACTTTGGCGCGTTATAATTGGCAGTCAGATAAATGGCCACGGTACAGCCCTTTTATACCGAAGCGACGACTTTGTTAATTGGACTAGAGCTGAAATTCCTCTTCATCACTCAAACAAGACCAAAATGTGGGAATGTCCTGATTTTTACCCTGTTAGTGTTGGTGGCAAAAATGGGGTTGACACAAATGTGCTAAGTGGAGATATAAAGCATGTTCTTAAGGCAAGTTTTAATGATCATGATCACTATATAATGGGAAAATATGATCCAAAAACAGATGGGTTTGTTGTAGAATCTGATTTTATGGACAAAGGATTGGAGTTTAGGTATGATTATGGGAATTTTTATGCTTCAAAAACATTTTATGATGGTAGTAGAAAGAGGAGGATATTGTGGGGGTGGATCCTTGAGGCTGATAGTAAATCTGATGATATCAACAAGGGATGGTCTGGTCTTCAGTCATTTCCTAGAAGAATTTTGTTGGGAGAAAATGGAAGGCAATTAGTACAGTGGCCAATCAAAGAAATTGAACAACTGCGGTCAAAACAAGTGAATCTCTTTAATAAAGAGCTCAAGGGTGGATCTGTACATGAAATTGAAGAAATCACTGCTTCACAGGCCGACGTGGAAATCTCATTTAATGTGACAAATTTGGAAGAGGCTGATTTGATAAGCCCAGATGAGGTGGACCCACAACTCCTCTGCACCCAAATTGGTGCATCAAAGAGGGCGAATATTGGGCCATTTGGATTGCTAGTTTTGGCCTCAAAGGACTTGGCTGAACAAACTGCAATCTTTTTTCGGATATTCAAAGGTCAACATGACAACTATATTGTGCTCATGTGTAGTGACCAAACCAGGTCATCTTTGAGAGCAGAGGTTACTAAAAGCACATATGGTGCTTTTGTTGACGCAGACCCTCGGATTGAAAGCATTTCATTGAGAAGCTTGATTGACCATTCAATTGTAGAGAGTTTTGGTGGTGAAGGGAGAGCTTGTATCACAGCTAGAGTTTATCCAAAGTTGGCAATTGATGAAGGGGCCCACCTTTATGCATTTAACAATGGCACACAAAGTGTGACCATCACAAGCCTTACTGCTTGGAGCATGAAGAATGCTCATATATTTCCAATTCAAAAAAGAAGAAAGAAGAAACCCCTCAATCACTTGATGAATTAA

Network for GWHGAAZE028380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00251.21	Glyco_hydro_32N	56	367	1.40E-94
PF08244.13	Glyco_hydro_32C	370	564	1.20E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01193	INV, sacA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Galactose metabolism	map00052
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.861
	SRR3591706	second leaf	16.767
	SRR3591707	mature leaf	7.069
	SRR3591708	Shoot apex	11.173
	SRR3591709	Stem	0.295
	SRR3591710	White floral bud	0.067
	SRR3591711	White flower	0.227
	SRR3591712	Green floral bud	0.033
	SRR3591713	Yellow flower	0.205
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.039
	SRR8316897	Juvenile bud stage	0.235
	SRR8316894	Third green stage	0.061
	SRR8316900	Third green stage	0.047
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.016
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.112
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.043
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.127
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.345
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.084
	CNS0095610	Silvery flower (tetraploid) 1	0.058
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.078
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.119
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.055
	CRR073301	Leaf 2	0.082
	CRR073302	Leaf 3	0.003
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.065
	CRR073315	Gold flowering 1	0.229
	CRR073316	Gold flowering 2	0.394
	CRR073317	Gold flowering 3	0.039
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.074
	CRR073320	Tawny withering 3	0.000