Gene detail

Detail information of GWHGAAZE028381

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648347.1	0	PREDICTED: ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Vitis vinifera]
COG	YP_001413397.1	2E-180	ATP-dependent metalloprotease FtsH
Swissprot	tr\|O80983\|FTSH4_ARATH	0	ATP-dependent zinc metalloprotease FTSH 4, mitochondrial (Precursor)
trEMBL	tr\|A0A067KQI6\|A0A067KQI6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP34089.1}
TAIR10	AT2G26140.1	0	FTSH protease 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	53722478	53732978	+
GWHAAZE00000008	mRNA	53722478	53732978	+
GWHAAZE00000008	exon	53722478	53722550	+
GWHAAZE00000008	exon	53724043	53724378	+
GWHAAZE00000008	exon	53724968	53725213	+
GWHAAZE00000008	exon	53725639	53725763	+
GWHAAZE00000008	exon	53727996	53728472	+
GWHAAZE00000008	exon	53732052	53732978	+
GWHAAZE00000008	CDS	53722478	53722550	+
GWHAAZE00000008	CDS	53724043	53724378	+
GWHAAZE00000008	CDS	53724968	53725213	+
GWHAAZE00000008	CDS	53725639	53725763	+
GWHAAZE00000008	CDS	53727996	53728472	+
GWHAAZE00000008	CDS	53732052	53732978	+

Transcript Sequence
>GWHTAAZE028415 ATGGGTACAGTCGTCGATGGTGTGCATTGGTCGTTCCAGGTGGGGAGGAGACCGTCGCCTATGCAACGGAGCAGTAAAGTTGCTATTATCTTCTTTGATACAAAAAAGCAAATATCTGATTCCAGCCCCCGTACTTTTCTTGCAGTTTATAGGCTTCCAAGTTCTCAAGGAAGGTTTTTCTCAAGTTACGTTGGCAGTTTTGCTCGCAGAGTACGAGATGCAAATGGATCGAGTGATGTTGCATATCTTAAGGAGCTTTATCGCCGTAATGATCCTGAGGCAGTGATAAGATTGTTTGAAAACCAGCCTTCATTACATTCTAACCCTAGAGCACTTGCTGAATATGTGAAGGCGTTGATCAAAGTCGATAGACTGGATGAAAGTGAATTGCTTAAGACATTGCAGAGAGGAATGGCAAGTTCTGGTAATTCATCATTGGAGGAAGAAAGTATTGGTGGTCTTTCAGCTTTTAGGAATGTGGGAAAATCTACGAAAGAAGGTGTACTAGGAACTCCTAGTGCTCCCATACATATGGTGACTGCCGAAGGCGCACATTTCAAAGAACAGTTGTGGCGTACATTCCGTGCTCTAGGCCTGGCCTTTCTCTTGATTTCAGGTGTTGGAGCCCTCATTGAGGATCGGGGTATCAGTAAAGGACTTGGTCTTAGTGAAGAGGTGCAACCCATCATTGAAACTAACACAAAATTCAATGATGTAAAGGGTGTTGATGAAGCGAAAGCAGAGCTAGAAGAAATTGTTCACTACCTTAGAGACCCTAAGCGTTTCACACGTCTTGGTGGGAAGCTCCCAAAGGGTGTTTTGCTAGTGGGCCCACCTGGGACGGGCAAGACTATGTTAGCAAGGGCTATAGCGGGAGAAGCTGGTGTACCTTTCTTTTCATGCAGCGGCAGTGAGTTTGAAGAGATGTTTGTTGGCGTTGGGGCCCGGAGAGTGAGAGATCTATTTTCGGCGGCAAAGAAGCGATCACCGTGTATAATATTCATTGACGAGATAGATGCCATAGGAGGAAGCCGTAATCCAAAGGACCAGCAATACATGAAGATGACTTTGAATCAATTGCTTGTTGAATTGGACGGCTTCAAACAAAACGAAGGGATTATTGTAATCGCCGCAACTAACTTCCCTGAGTCGTTGGATAAGGCATTGGTGAGACCTGGACGGTTTGATCGTCACATTGTTGTTCCGAATCCTGATGTTGAAGGGCGGAGGCAAATCATGGAATCCCACATGTCTAAGGTTCTAAAGGGAGATGACGTAGATCTGATGATAATTGCAAGAGGAACTCCTGGTTTCTCAGGCGCCGATCTTGCAAACCTGGTCAACATCGCTGCACTCAAGGCTGCAATGGACGGTGCAAAATCAGTGAGCATGGACGATCTAGAATACGCAAAGGACAAGATCATGATGGGCAGTGAACGAAAGTCTGCTGTCATATCGGATGAGTCCCGAAAGCTAACTGCCTTTCATGAGGGGGGGCACGCCCTTGTGGCCATCCACACTGATGGTGCCCTCCCAGTTCATAAGGCCACGATCGTGCCACGTGGCATGTCCCTTGGCATGGTTGCCCAATTGCCTGATAAAGACGAAACAAGTGTGTCCCGCAAACAAATGCTTGCTCGGCTTGACGTATGTATGGGCGGTCGAGTGGCTGAAGAGCTTATTTTTGGAGAAAGCGAGGTCACTTCGGGTGCATCATCGGATTTACAAAATGCAACTGAGTTGGCTAGGGCGATGGTTACTAAATATGGTATGAGCAAGCAAGTCGGTGTGGTGACCCATAACTATGACGATAATGGGAAGAGCATGAGCACCGAGACCCGGCTCCTGATTGAGCAAGAGGTGCGGGAGTTACTGGAAAGGGCTTATAACAACGCAAAAACAATCTTGACTGTCCATCACAAGGAGCTACACGCGCTCGCTAATGCGTTACTCGAGCACGAGACACTTTCCGGGAGTCAAATCAAGGCTTTGCTCGCTCGGGTCAACTCTGGTCAACCACAGCAGCATCTAGCTGTACCTCAGAGTACTTCCCAGTCCAGCCTGGTTCCCCCCTCGACGCCCAATGCAGCAGCATCAGCGGCAGCAGCAGCAGGGGCAGCAGCAGCTGCAGCCGCTGCCAGTGCTGCAGCCAAGGCGAAAGGTGTTGCCCCGGTAGGATCATAG

Network for GWHGAAZE028381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00004.30	AAA	273	402	5.00E-44
PF17862.2	AAA_lid_3	425	468	1.80E-10
PF01434.19	Peptidase_M41	484	663	4.00E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08955	YME1	Mitophagy - yeast	map04139

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0004222	molecular_function	metalloendopeptidase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.943
	SRR3591706	second leaf	9.834
	SRR3591707	mature leaf	14.660
	SRR3591708	Shoot apex	12.404
	SRR3591709	Stem	14.309
	SRR3591710	White floral bud	25.174
	SRR3591711	White flower	23.919
	SRR3591712	Green floral bud	20.741
	SRR3591713	Yellow flower	19.228
SRP173429	SRR8316895	Juvenile bud stage	15.082
	SRR8316896	Juvenile bud stage	21.248
	SRR8316897	Juvenile bud stage	7.216
	SRR8316894	Third green stage	7.805
	SRR8316900	Third green stage	28.269
	SRR8316901	Third green stage	25.118
	SRR8316898	Complete white stage	12.908
	SRR8316899	Complete white stage	33.143
	SRR8316903	Complete white stage	20.726
	SRR8316902	Silver flowering stage	13.964
	SRR8316904	Silver flowering stage	15.939
	SRR8316905	Silver flowering stage	7.741
	SRR8316906	Gold flowering stage	34.445
	SRR8316907	Gold flowering stage	32.500
	SRR8316908	Gold flowering stage	24.882
SRP132670	SRR6706286	Control	23.382
	SRR6706287	Light intensity 50%	23.631
	SRR6706288	Light intensity 20%	23.595
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.987
	CNS0095593	Slightly white alabastrum(diploid) 2	16.346
	CNS0095594	Slightly white alabastrum(diploid) 3	15.294
	CNS0095595	Whole white alabastrum(diploid) 2	14.521
	CNS0095596	Whole white alabastrum(diploid) 3	15.152
	CNS0095597	Whole white alabastrum(diploid) 4	15.432
	CNS0095598	Silvery flower (diploied) 1	17.508
	CNS0095599	Silvery flower (diploied) 2	19.069
	CNS0095600	Silvery flower (diploied) 3	37.146
	CNS0095601	Golden flower (diploid) 1	17.852
	CNS0095602	Golden flower (diploid) 2	34.367
	CNS0095603	Golden flower (diploid) 3	35.501
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.172
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.949
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.928
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.346
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.418
	CNS0095610	Silvery flower (tetraploid) 1	29.214
	CNS0095611	Silvery flower (tetraploid) 2	27.662
	CNS0095612	Silvery flower (tetraploid) 3	25.634
	CNS0095613	Golden flower (tetraploid) 1	16.109
	CNS0095614	Golden flower (tetraploid) 2	27.692
	CNS0095615	Golden flower (tetraploid) 3	27.088
CRA001975	CRR073297	Stem 1	25.250
	CRR073298	Stem 2	25.559
	CRR073299	Stem 3	30.180
	CRR073300	Leaf 1	30.626
	CRR073301	Leaf 2	28.552
	CRR073302	Leaf 3	22.322
	CRR073303	Juvenile bud 1	32.205
	CRR073304	Juvenile bud 2	30.442
	CRR073305	Juvenile bud 3	41.897
	CRR073306	Third green 1	28.803
	CRR073307	Third green 2	25.369
	CRR073308	Third green 3	25.933
	CRR073309	Second white 1	34.846
	CRR073310	Second white 2	32.048
	CRR073311	Second white 3	31.125
	CRR073312	Silver flowering 1	37.967
	CRR073313	Silver flowering 2	43.313
	CRR073314	Silver flowering 3	34.103
	CRR073315	Gold flowering 1	17.035
	CRR073316	Gold flowering 2	22.117
	CRR073317	Gold flowering 3	24.504
	CRR073318	Tawny withering 1	23.125
	CRR073319	Tawny withering 2	17.444
	CRR073320	Tawny withering 3	23.357