Gene detail

Detail information of GWHGAAZE028385

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAE48709.1	0	ZIP family metal transporter [Chengiopanax sciadophylloides]
Swissprot	tr\|O04089\|ZIP4_ARATH	3E-159	Zinc transporter 4, chloroplastic (Precursor)
trEMBL	tr\|Q2Z1Q1\|Q2Z1Q1_CHESC	0	ZIP family metal transporter {ECO:0000313\|EMBL:BAE48709.1}
TAIR10	AT1G10970.1	6E-116	zinc transporter 4 precursor

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	53917343	53919606	+
GWHAAZE00000008	mRNA	53917343	53919606	+
GWHAAZE00000008	exon	53917343	53918035	+
GWHAAZE00000008	exon	53919151	53919606	+
GWHAAZE00000008	CDS	53917343	53918035	+
GWHAAZE00000008	CDS	53919151	53919606	+

Transcript Sequence
>GWHTAAZE028419 ATGTCCACCACAATTTGTGGCGGGGACACTGCCGAAGTCTCATGCCGAGATGATAAGCAAGCTCTTGCCCTCAAAATGGTGGCTATAGCCACCATCCTCCTTGCCGGAGTAGCTGGCGTTGCCATCCCTCTTGTGGGGAAGAAACGCCGGTTCCTCCGAACCGACTCCAACTTGTTCTTTGCCGCCAAGGCCTTTGCTGCCGGAGTTATCCTTGCCACCGGCTTCGTCCACATGCTACCGGATGCTACGGAAGCCCTAATGGACACATGCCTACCCAAAAACCCTTGGTCCAATTTCCCTTTCTCGGGGTTCTTTGCCATGATGGCCGCCCTCGCCACATTGCTAGTTGACTTTGTGGGGACCCAGTATTACGAGAGGAAGCAAGAGGAGAAGAAGCAGGGCGAGTTGGGTCGAGTTGAGTCGGTGGACTCGGGGTCTGTGTTTGAGTCAGATGGTATCATACCAGTGGAGGTGAAGGAGAGTAGTGAGAAGGTGTTTGGGGAAGAGGAAGGAGGGGGGATGCATATAGTGGGAATGCACGCGCATGCTGCTCATCACAGGCATAATCACCCACAAGAGGAGGGGGCATGTGTGGGGCATGCAAGGGGGGAGGACTCGCACGGGCACTCACACTCGCACGGATTTGGTGGTGGGAATGAGGAAGGTGGTGTCAGGCATGTGGTTGTTTCACAGGTTTTGGAACTTGGGATTGTATCGCACTCGATCATAATCGGATTTTCACTCGGAGTCTCACAAAGTCCATGTAGCATAAGACCTTTGATAGGCGCGTTATCATTCCACCAATTCTTCGAAGGATTCGCCCTAGGAGGCTGCATTTCTCAAGCACAATTTCACACCTTACACACAACACTAATGGCCTGTTTTTTTGCTGTAACGACGCCAATTGGGATTGCGATAGGGACTGCCGTCTCTTCGTTCTACAACCCGAATAGCCCTAGAGCACTTGTAATTGAAGGCATATTTGATTCTATATCTGCTGGGATCTTAATTTATATGGCATTAGTGGACTTGATTGCTGCAGATTTCATGAGCAAGAGGATGAAGTGTAATATTAGGCTGCAAATAGTGTCTTATTTCACTCTTTTTCTTGGGGCTCTATTAATGTCTTTACTTGCTATATGGGCTTGA

Network for GWHGAAZE028385

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0004

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02535.23	Zip	23	379	3.60E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0055085	biological_process	transmembrane transport
GO:0071577	biological_process	zinc ion transmembrane transport
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0046873	molecular_function	metal ion transmembrane transporter activity
GO:0005385	molecular_function	zinc ion transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.986
	SRR3591706	second leaf	15.899
	SRR3591707	mature leaf	28.112
	SRR3591708	Shoot apex	9.491
	SRR3591709	Stem	11.332
	SRR3591710	White floral bud	10.559
	SRR3591711	White flower	13.660
	SRR3591712	Green floral bud	14.612
	SRR3591713	Yellow flower	18.848
SRP173429	SRR8316895	Juvenile bud stage	22.892
	SRR8316896	Juvenile bud stage	34.514
	SRR8316897	Juvenile bud stage	8.387
	SRR8316894	Third green stage	11.160
	SRR8316900	Third green stage	42.540
	SRR8316901	Third green stage	19.276
	SRR8316898	Complete white stage	10.802
	SRR8316899	Complete white stage	18.493
	SRR8316903	Complete white stage	10.429
	SRR8316902	Silver flowering stage	4.057
	SRR8316904	Silver flowering stage	8.652
	SRR8316905	Silver flowering stage	3.163
	SRR8316906	Gold flowering stage	9.358
	SRR8316907	Gold flowering stage	17.486
	SRR8316908	Gold flowering stage	9.646
SRP132670	SRR6706286	Control	219.526
	SRR6706287	Light intensity 50%	109.642
	SRR6706288	Light intensity 20%	69.469
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.098
	CNS0095593	Slightly white alabastrum(diploid) 2	22.179
	CNS0095594	Slightly white alabastrum(diploid) 3	14.523
	CNS0095595	Whole white alabastrum(diploid) 2	17.275
	CNS0095596	Whole white alabastrum(diploid) 3	27.215
	CNS0095597	Whole white alabastrum(diploid) 4	18.665
	CNS0095598	Silvery flower (diploied) 1	5.126
	CNS0095599	Silvery flower (diploied) 2	6.599
	CNS0095600	Silvery flower (diploied) 3	7.138
	CNS0095601	Golden flower (diploid) 1	3.390
	CNS0095602	Golden flower (diploid) 2	5.624
	CNS0095603	Golden flower (diploid) 3	6.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.688
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.096
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.051
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.853
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.526
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.361
	CNS0095610	Silvery flower (tetraploid) 1	10.428
	CNS0095611	Silvery flower (tetraploid) 2	4.799
	CNS0095612	Silvery flower (tetraploid) 3	6.014
	CNS0095613	Golden flower (tetraploid) 1	9.633
	CNS0095614	Golden flower (tetraploid) 2	7.837
	CNS0095615	Golden flower (tetraploid) 3	4.135
CRA001975	CRR073297	Stem 1	24.058
	CRR073298	Stem 2	30.231
	CRR073299	Stem 3	27.114
	CRR073300	Leaf 1	29.175
	CRR073301	Leaf 2	43.138
	CRR073302	Leaf 3	24.179
	CRR073303	Juvenile bud 1	26.020
	CRR073304	Juvenile bud 2	20.617
	CRR073305	Juvenile bud 3	47.838
	CRR073306	Third green 1	9.075
	CRR073307	Third green 2	7.258
	CRR073308	Third green 3	9.031
	CRR073309	Second white 1	4.441
	CRR073310	Second white 2	4.501
	CRR073311	Second white 3	5.593
	CRR073312	Silver flowering 1	2.795
	CRR073313	Silver flowering 2	4.068
	CRR073314	Silver flowering 3	4.412
	CRR073315	Gold flowering 1	137.977
	CRR073316	Gold flowering 2	134.640
	CRR073317	Gold flowering 3	99.427
	CRR073318	Tawny withering 1	4.669
	CRR073319	Tawny withering 2	1.752
	CRR073320	Tawny withering 3	7.550