Gene detail

Detail information of GWHGAAZE028403

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU29999.1	1.34662E-78	hypothetical protein MIMGU_mgv1a007076mg [Erythranthe guttata]
COG	YP_004514803.1	5E-50	cysteinyl-tRNA synthetase
trEMBL	tr\|A0A022QR14\|A0A022QR14_ERYGU	5E-79	Uncharacterized protein {ECO:0000313\|EMBL:EYU29999.1}
TAIR10	AT2G31170.1	4E-48	Cysteinyl-tRNA synthetase, class Ia family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	54675045	54680023	-
GWHAAZE00000008	mRNA	54675045	54680023	-
GWHAAZE00000008	exon	54675045	54675281	-
GWHAAZE00000008	exon	54675403	54675519	-
GWHAAZE00000008	exon	54676605	54676886	-
GWHAAZE00000008	exon	54677404	54677483	-
GWHAAZE00000008	exon	54679184	54679256	-
GWHAAZE00000008	exon	54679784	54679847	-
GWHAAZE00000008	exon	54679944	54680023	-
GWHAAZE00000008	CDS	54679944	54680023	-
GWHAAZE00000008	CDS	54679784	54679847	-
GWHAAZE00000008	CDS	54679184	54679256	-
GWHAAZE00000008	CDS	54677404	54677483	-
GWHAAZE00000008	CDS	54676605	54676886	-
GWHAAZE00000008	CDS	54675403	54675519	-
GWHAAZE00000008	CDS	54675045	54675281	-

Transcript Sequence
>GWHTAAZE028437 ATGTATATCTGTGGTATCACTCCTTATGATCACAGTCCGTTGGCCATGCAGCTCCATGGTCGCTTCGGCGTTCTTTGCAGATACTTGCAGCACTTGGGATACAATGCCAACTATGTTAGAAATTTCACGGATGTTGATGACAAGATGGCTCTACTCTTGTTTCACTGCAAGTCGGTCTGTGATGCAACTCATGCAAGCATTCCAGATAAACCCCAAAATAACCGAAGAGGTTATGGCGAACAGCGAGTTGACTTTGATCCCAGGAAGCGAGATCAGTCCGACTTAGCCTTGTGGAAGGCGGCAAAGCTAGGTGAACCAAGTTGGGAAAGCCCCTGGGGTCATGGAAGACCAGGATGGCACATAGAGTGCAGTGCTATGAGTTCTCACTATCTTAGCTTGGAGTTTGACATTCATGGCGGTGGAATAGATTTGAAGTTTCCACATCATGAAAATGAAATTGCCCAGAGTTGGGCTGTCTGCCCGGAAAGCAAAGTCGGGTATTGGGTGCATGTTGGCAGTGTCACAAAGGACAGCAAGAAAATGTCCAAATCAGATGGAAATTACGTGACCATTGGCGAGAAGTTGAAAGGAGGAAAGCAACATCAATCATTGGCTCAATCCTTGATAGAAATAGGGAAAGAAGTGAAGAAAGTGTTGAACATTCTTGGGTTGTTGTCTCCTTCGAGCTATTCTGAGGTACTGAAAGAGCTAAAGCAGAAAGCATTGGAGAGAGCGAAGGTGAAGGAAGAATATGTGTCCAAAATGATTCAAGAAAGAGCACAGTCGAGGAAGGAGAGAGACTTTACGAGGGCTGATGAGATAAGGAGGACTTTGGAAGCTAAGGGCATTGCTCTCGCTGATTCCATCGGCCCATCACCGGACAACACCACTTACTGGAGTCCTTGTGTTCCTATTCAAACCAAACACAGCTAA

Network for GWHGAAZE028403

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01406.20	tRNA-synt_1e	1	50	1.10E-09
PF01406.20	tRNA-synt_1e	82	198	1.80E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01883	CARS, cysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.756
	SRR3591706	second leaf	0.602
	SRR3591707	mature leaf	0.710
	SRR3591708	Shoot apex	4.165
	SRR3591709	Stem	2.589
	SRR3591710	White floral bud	2.972
	SRR3591711	White flower	3.355
	SRR3591712	Green floral bud	5.328
	SRR3591713	Yellow flower	1.792
SRP173429	SRR8316895	Juvenile bud stage	3.850
	SRR8316896	Juvenile bud stage	4.650
	SRR8316897	Juvenile bud stage	3.143
	SRR8316894	Third green stage	1.582
	SRR8316900	Third green stage	2.965
	SRR8316901	Third green stage	3.313
	SRR8316898	Complete white stage	0.489
	SRR8316899	Complete white stage	3.977
	SRR8316903	Complete white stage	0.842
	SRR8316902	Silver flowering stage	0.661
	SRR8316904	Silver flowering stage	0.381
	SRR8316905	Silver flowering stage	0.146
	SRR8316906	Gold flowering stage	0.768
	SRR8316907	Gold flowering stage	1.028
	SRR8316908	Gold flowering stage	2.134
SRP132670	SRR6706286	Control	2.253
	SRR6706287	Light intensity 50%	2.004
	SRR6706288	Light intensity 20%	2.091
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.768
	CNS0095593	Slightly white alabastrum(diploid) 2	4.173
	CNS0095594	Slightly white alabastrum(diploid) 3	4.670
	CNS0095595	Whole white alabastrum(diploid) 2	3.699
	CNS0095596	Whole white alabastrum(diploid) 3	2.253
	CNS0095597	Whole white alabastrum(diploid) 4	2.344
	CNS0095598	Silvery flower (diploied) 1	2.655
	CNS0095599	Silvery flower (diploied) 2	2.746
	CNS0095600	Silvery flower (diploied) 3	1.621
	CNS0095601	Golden flower (diploid) 1	2.299
	CNS0095602	Golden flower (diploid) 2	1.196
	CNS0095603	Golden flower (diploid) 3	1.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.774
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.297
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.651
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.094
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.809
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.101
	CNS0095610	Silvery flower (tetraploid) 1	1.961
	CNS0095611	Silvery flower (tetraploid) 2	1.961
	CNS0095612	Silvery flower (tetraploid) 3	2.599
	CNS0095613	Golden flower (tetraploid) 1	0.554
	CNS0095614	Golden flower (tetraploid) 2	1.446
	CNS0095615	Golden flower (tetraploid) 3	1.020
CRA001975	CRR073297	Stem 1	6.009
	CRR073298	Stem 2	4.441
	CRR073299	Stem 3	6.701
	CRR073300	Leaf 1	3.332
	CRR073301	Leaf 2	3.429
	CRR073302	Leaf 3	2.549
	CRR073303	Juvenile bud 1	2.331
	CRR073304	Juvenile bud 2	1.486
	CRR073305	Juvenile bud 3	3.442
	CRR073306	Third green 1	0.392
	CRR073307	Third green 2	0.340
	CRR073308	Third green 3	0.934
	CRR073309	Second white 1	0.462
	CRR073310	Second white 2	0.613
	CRR073311	Second white 3	0.269
	CRR073312	Silver flowering 1	0.193
	CRR073313	Silver flowering 2	0.086
	CRR073314	Silver flowering 3	0.243
	CRR073315	Gold flowering 1	0.219
	CRR073316	Gold flowering 2	0.636
	CRR073317	Gold flowering 3	0.563
	CRR073318	Tawny withering 1	0.967
	CRR073319	Tawny withering 2	0.630
	CRR073320	Tawny withering 3	0.452