Gene detail

Detail information of GWHGAAZE028420

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007012236.1	0	Gamma vacuolar processing enzyme [Theobroma cacao]
COG	YP_004254713.1	7E-11	Legumain
Swissprot	tr\|P49043\|VPE_CITSI	0	Vacuolar-processing enzyme (Precursor)
trEMBL	tr\|A0A061GJ06\|A0A061GJ06_THECC	0	Gamma vacuolar processing enzyme {ECO:0000313\|EMBL:EOY29855.1}
TAIR10	AT4G32940.1	2E-170	gamma vacuolar processing enzyme

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	55635609	55645032	+
GWHAAZE00000008	mRNA	55635609	55645032	+
GWHAAZE00000008	exon	55635609	55635852	+
GWHAAZE00000008	exon	55638857	55639022	+
GWHAAZE00000008	exon	55639105	55639261	+
GWHAAZE00000008	exon	55640141	55640226	+
GWHAAZE00000008	exon	55640324	55640523	+
GWHAAZE00000008	exon	55641605	55641653	+
GWHAAZE00000008	exon	55642203	55642412	+
GWHAAZE00000008	exon	55643221	55643418	+
GWHAAZE00000008	exon	55644850	55645032	+
GWHAAZE00000008	five_prime_UTR	55635609	55635852	+
GWHAAZE00000008	five_prime_UTR	55638857	55638905	+
GWHAAZE00000008	CDS	55638906	55639022	+
GWHAAZE00000008	CDS	55639105	55639261	+
GWHAAZE00000008	CDS	55640141	55640226	+
GWHAAZE00000008	CDS	55640324	55640523	+
GWHAAZE00000008	CDS	55641605	55641653	+
GWHAAZE00000008	CDS	55642203	55642412	+
GWHAAZE00000008	CDS	55643221	55643418	+
GWHAAZE00000008	CDS	55644850	55645032	+

Transcript Sequence
>GWHTAAZE028454 GGAGCCGAAAATGATTCGATACACCGCCGGTTCACTGCTCCTCCTAGTCCTCTCTATCGCCGCCGTCGTTGACAGCCGGGACATCATCAGCGATGTGCTGAGACTGCCGTCTCAAGCTTCGAAATTCTTCGATTCTGTCGCTTCTTTCGCCGATGATAGTAATTCCGGCGATGATGATTCTGTAGGGACGAGATGGGCGGTCCTGATTGCTGGATCTAACGGTTACTGGAATTACAGGCACCAGGCTGATGTATGTCATGCCTATCAAATCTTGAAGAAAGGTGGTGTAAAAGATGAAAATATTATTGTTTTTATGTACTGACGACATTGCTTACGATGAAGAGAACCCGAGGCCTGGAGTCATCATTAACAGCCCACATGGTAGTGATGTCTATGAAGGAGTTCCGAAGGATTATATTGGGGATGATGTTACTGTTGACAACTTTTTTGCTGCAATCCTTGGAAACAAATCTGCTCTCACAGGGGGTAGTGGGAAAGTTGTGAATAGTGGTCCAAATGATCACATTTTCATATACTATACTGATCATGGCGGTCCTGGGGTGCTGGGGATGCCGACCTATCCATACATCTATGCAGATGATCTTATAGAAGTTTTGAAAAAGAAGCATGCTGCAGGGACATACAAAAGCTTGGTATTTTACCTTGAATCTTGTGAATCTGGAAGTATATTTGAGGGTCTTCTTCCCGAAGGTTTAAACATTTATGCCACCACAGCCTCGGGTGCAGATGAGAGCAGCTGGGGATGCTATTGCCCCGGAGAGTATCCCAGCCCACCACCAGAATATGAAACCTGTTTGGGTGACTTGTATAGTGTTGCCTGGATGGAGGACTGTGACATCCACAATCTCAAGACAGAAACGCTGCGGCAGCAATATCAAGTGGTTAAAAAGAGAACTTCAAGTGACAACTCTGGGTATGGATCCAGTGTAATGCAATACGGTGATCTAAAGCTTAGCAAGGATGCTCTATATCTATATGTAGGTACAAATCCTGCAAATGATAACTTCACTTTCGTGGATGATAACTCCCTACGCCCATCCTCAAAAGCTGTTAACCAGCGTGACGCTGATCTTATACATTTCTGGGCAAAGGCTCCTGAAGGCTCTGCTAGGAAAATTAACGCCCAGAAGCAGTTTGCTGAAGCTATGGCTCACAGGATGCACCTAGATAGCAGCATAGAACTTGTTGGAAAGCTTTTGTTTGGACTTGAGAATGGTCCCGAGGTACTCAAGACTGTTCGACCCGCGGGCCAACCTCTTGTTGATGACTGGGCTTGCCTTAAGACACTGGTGAGAACATTTGAGACGCACTGCGGATCATTGTCCCAATACGGGATGAAACACATGCGGTCCATAGCAAATATATGCAATGCTGGGATCCAAAAGGAGCAAATGTCCGAGGCTTCGGCTCAAGCGTGTCCCACTTTTCCTTCTAATCAATGGAGCTCTCTCCACAAAGGGTTCAGTGCATGA

Network for GWHGAAZE028420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01650.19	Peptidase_C13	6	237	6.30E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01369	LGMN	Lysosome	map04142
K01369	LGMN	Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008233	molecular_function	peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	152.454
	SRR3591706	second leaf	126.748
	SRR3591707	mature leaf	217.860
	SRR3591708	Shoot apex	79.232
	SRR3591709	Stem	390.131
	SRR3591710	White floral bud	568.172
	SRR3591711	White flower	2087.040
	SRR3591712	Green floral bud	96.216
	SRR3591713	Yellow flower	1636.778
SRP173429	SRR8316895	Juvenile bud stage	67.184
	SRR8316896	Juvenile bud stage	117.778
	SRR8316897	Juvenile bud stage	32.079
	SRR8316894	Third green stage	55.294
	SRR8316900	Third green stage	163.980
	SRR8316901	Third green stage	145.559
	SRR8316898	Complete white stage	140.669
	SRR8316899	Complete white stage	370.185
	SRR8316903	Complete white stage	187.335
	SRR8316902	Silver flowering stage	1196.142
	SRR8316904	Silver flowering stage	1704.512
	SRR8316905	Silver flowering stage	893.024
	SRR8316906	Gold flowering stage	3011.156
	SRR8316907	Gold flowering stage	2952.309
	SRR8316908	Gold flowering stage	2822.927
SRP132670	SRR6706286	Control	163.947
	SRR6706287	Light intensity 50%	159.872
	SRR6706288	Light intensity 20%	164.369
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	73.389
	CNS0095593	Slightly white alabastrum(diploid) 2	79.984
	CNS0095594	Slightly white alabastrum(diploid) 3	75.367
	CNS0095595	Whole white alabastrum(diploid) 2	67.865
	CNS0095596	Whole white alabastrum(diploid) 3	41.263
	CNS0095597	Whole white alabastrum(diploid) 4	64.408
	CNS0095598	Silvery flower (diploied) 1	563.920
	CNS0095599	Silvery flower (diploied) 2	523.712
	CNS0095600	Silvery flower (diploied) 3	2134.938
	CNS0095601	Golden flower (diploid) 1	473.775
	CNS0095602	Golden flower (diploid) 2	2009.510
	CNS0095603	Golden flower (diploid) 3	1895.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.331
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.096
	CNS0095606	Slightly white alabastrum(tetraploid) 3	159.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	47.268
	CNS0095608	Whole white alabastrum(tetraploid) 2	29.390
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.878
	CNS0095610	Silvery flower (tetraploid) 1	1293.989
	CNS0095611	Silvery flower (tetraploid) 2	1450.486
	CNS0095612	Silvery flower (tetraploid) 3	1422.040
	CNS0095613	Golden flower (tetraploid) 1	801.560
	CNS0095614	Golden flower (tetraploid) 2	1082.310
	CNS0095615	Golden flower (tetraploid) 3	809.204
CRA001975	CRR073297	Stem 1	140.207
	CRR073298	Stem 2	138.889
	CRR073299	Stem 3	199.771
	CRR073300	Leaf 1	195.982
	CRR073301	Leaf 2	179.752
	CRR073302	Leaf 3	177.902
	CRR073303	Juvenile bud 1	207.897
	CRR073304	Juvenile bud 2	130.622
	CRR073305	Juvenile bud 3	286.014
	CRR073306	Third green 1	1390.346
	CRR073307	Third green 2	1038.791
	CRR073308	Third green 3	1107.473
	CRR073309	Second white 1	3029.138
	CRR073310	Second white 2	2504.264
	CRR073311	Second white 3	2157.469
	CRR073312	Silver flowering 1	1718.357
	CRR073313	Silver flowering 2	2411.948
	CRR073314	Silver flowering 3	1951.413
	CRR073315	Gold flowering 1	510.145
	CRR073316	Gold flowering 2	564.669
	CRR073317	Gold flowering 3	639.525
	CRR073318	Tawny withering 1	459.154
	CRR073319	Tawny withering 2	368.143
	CRR073320	Tawny withering 3	330.154