Detail information of GWHGAAZE028430


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI20609.30unnamed protein product [Vitis vinifera]
Swissprottr|O82804|ELF3_ARATH1E-105Protein EARLY FLOWERING 3
trEMBLtr|F6H384|F6H384_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46540.1}
TAIR10AT2G25930.14E-77hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5594054455948313-
GWHAAZE00000008mRNA5594054455948313-
GWHAAZE00000008exon5594799255948313-
GWHAAZE00000008exon5594502155945682-
GWHAAZE00000008exon5594225955942310-
GWHAAZE00000008exon5594054455941623-
GWHAAZE00000008five_prime_UTR5594821155948313-
GWHAAZE00000008CDS5594799255948210-
GWHAAZE00000008CDS5594502155945682-
GWHAAZE00000008CDS5594225955942310-
GWHAAZE00000008CDS5594054455941623-
Transcript Sequence

Network for GWHGAAZE028430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12125ELF3 Circadian rhythm - plant map04712

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.475
SRR3591706second leaf25.625
SRR3591707mature leaf46.012
SRR3591708Shoot apex25.670
SRR3591709Stem40.574
SRR3591710White floral bud221.100
SRR3591711White flower183.867
SRR3591712Green floral bud28.610
SRR3591713Yellow flower123.926
SRP173429 SRR8316895Juvenile bud stage 13.483
SRR8316896Juvenile bud stage 18.919
SRR8316897Juvenile bud stage 8.992
SRR8316894Third green stage 6.777
SRR8316900Third green stage 16.430
SRR8316901Third green stage 19.085
SRR8316898Complete white stage 113.679
SRR8316899Complete white stage 37.814
SRR8316903Complete white stage 190.953
SRR8316902Silver flowering stage123.945
SRR8316904Silver flowering stage206.465
SRR8316905Silver flowering stage112.956
SRR8316906Gold flowering stage 294.896
SRR8316907Gold flowering stage 219.847
SRR8316908Gold flowering stage 203.983
SRP132670SRR6706286Control27.673
SRR6706287Light intensity 50%31.535
SRR6706288Light intensity 20%20.425
CNP0000432CNS0095592Slightly white alabastrum(diploid) 117.782
CNS0095593Slightly white alabastrum(diploid) 219.341
CNS0095594Slightly white alabastrum(diploid) 314.689
CNS0095595Whole white alabastrum(diploid) 217.787
CNS0095596Whole white alabastrum(diploid) 311.883
CNS0095597Whole white alabastrum(diploid) 415.272
CNS0095598Silvery flower (diploied) 184.947
CNS0095599Silvery flower (diploied) 2102.323
CNS0095600Silvery flower (diploied) 3401.822
CNS0095601Golden flower (diploid) 198.871
CNS0095602Golden flower (diploid) 2215.332
CNS0095603Golden flower (diploid) 3213.827
CNS0095604Slightly white alabastrum(tetraploid) 122.797
CNS0095605Slightly white alabastrum(tetraploid) 217.781
CNS0095606Slightly white alabastrum(tetraploid) 337.809
CNS0095607Whole white alabastrum(tetraploid) 118.266
CNS0095608Whole white alabastrum(tetraploid) 215.188
CNS0095609Whole white alabastrum(tetraploid) 323.983
CNS0095610Silvery flower (tetraploid) 1275.943
CNS0095611Silvery flower (tetraploid) 2382.733
CNS0095612Silvery flower (tetraploid) 3614.538
CNS0095613Golden flower (tetraploid) 1176.182
CNS0095614Golden flower (tetraploid) 2257.403
CNS0095615Golden flower (tetraploid) 3441.295
CRA001975CRR073297Stem 125.677
CRR073298Stem 225.930
CRR073299Stem 328.914
CRR073300Leaf 127.384
CRR073301Leaf 220.689
CRR073302Leaf 317.003
CRR073303Juvenile bud 124.117
CRR073304Juvenile bud 231.879
CRR073305Juvenile bud 336.133
CRR073306Third green 1372.896
CRR073307Third green 2233.408
CRR073308Third green 3288.228
CRR073309Second white 1359.525
CRR073310Second white 2314.258
CRR073311Second white 3301.865
CRR073312Silver flowering 1178.955
CRR073313Silver flowering 2158.198
CRR073314Silver flowering 3145.451
CRR073315Gold flowering 124.288
CRR073316Gold flowering 235.641
CRR073317Gold flowering 336.110
CRR073318Tawny withering 131.609
CRR073319Tawny withering 234.636
CRR073320Tawny withering 328.619