Detail information of GWHGAAZE028473


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002281191.22.774E-67PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial isoform X1 [Vitis vinifera]
COGYP_003423251.12E-12peptidyl-tRNA hydrolase
trEMBLtr|D7SU93|D7SU93_VITVI1E-67Putative uncharacterized protein {ECO:0000313|EMBL:CBI20842.3}
TAIR10AT4G32900.21E-42Peptidyl-tRNA hydrolase II (PTH2) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5781201757822065-
GWHAAZE00000008mRNA5781201757822065-
GWHAAZE00000008exon5782203357822065-
GWHAAZE00000008exon5782173557821944-
GWHAAZE00000008exon5781717857817238-
GWHAAZE00000008exon5781668357816719-
GWHAAZE00000008exon5781572957815801-
GWHAAZE00000008exon5781520557815275-
GWHAAZE00000008exon5781201757812158-
GWHAAZE00000008CDS5782203357822065-
GWHAAZE00000008CDS5782173557821944-
GWHAAZE00000008CDS5781717857817238-
GWHAAZE00000008CDS5781668357816719-
GWHAAZE00000008CDS5781572957815801-
GWHAAZE00000008CDS5781520557815275-
GWHAAZE00000008CDS5781201757812158-
Transcript Sequence

Network for GWHGAAZE028473

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0059


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01981.17PTH2791133.40E-12
PF01981.17PTH21151537.70E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.921
SRR3591706second leaf10.998
SRR3591707mature leaf11.449
SRR3591708Shoot apex24.554
SRR3591709Stem23.111
SRR3591710White floral bud6.384
SRR3591711White flower9.269
SRR3591712Green floral bud9.289
SRR3591713Yellow flower8.872
SRP173429 SRR8316895Juvenile bud stage 3.850
SRR8316896Juvenile bud stage 6.061
SRR8316897Juvenile bud stage 3.098
SRR8316894Third green stage 3.698
SRR8316900Third green stage 8.388
SRR8316901Third green stage 6.225
SRR8316898Complete white stage 3.097
SRR8316899Complete white stage 9.878
SRR8316903Complete white stage 5.262
SRR8316902Silver flowering stage4.616
SRR8316904Silver flowering stage3.034
SRR8316905Silver flowering stage2.472
SRR8316906Gold flowering stage 8.675
SRR8316907Gold flowering stage 7.943
SRR8316908Gold flowering stage 8.522
SRP132670SRR6706286Control7.328
SRR6706287Light intensity 50%7.042
SRR6706288Light intensity 20%8.184
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.152
CNS0095593Slightly white alabastrum(diploid) 25.825
CNS0095594Slightly white alabastrum(diploid) 37.428
CNS0095595Whole white alabastrum(diploid) 25.148
CNS0095596Whole white alabastrum(diploid) 35.841
CNS0095597Whole white alabastrum(diploid) 45.351
CNS0095598Silvery flower (diploied) 17.245
CNS0095599Silvery flower (diploied) 27.634
CNS0095600Silvery flower (diploied) 36.114
CNS0095601Golden flower (diploid) 17.695
CNS0095602Golden flower (diploid) 24.712
CNS0095603Golden flower (diploid) 36.290
CNS0095604Slightly white alabastrum(tetraploid) 114.224
CNS0095605Slightly white alabastrum(tetraploid) 215.327
CNS0095606Slightly white alabastrum(tetraploid) 325.966
CNS0095607Whole white alabastrum(tetraploid) 17.877
CNS0095608Whole white alabastrum(tetraploid) 26.067
CNS0095609Whole white alabastrum(tetraploid) 315.027
CNS0095610Silvery flower (tetraploid) 116.634
CNS0095611Silvery flower (tetraploid) 213.287
CNS0095612Silvery flower (tetraploid) 319.410
CNS0095613Golden flower (tetraploid) 112.247
CNS0095614Golden flower (tetraploid) 211.182
CNS0095615Golden flower (tetraploid) 313.550
CRA001975CRR073297Stem 16.930
CRR073298Stem 26.947
CRR073299Stem 36.363
CRR073300Leaf 16.406
CRR073301Leaf 26.026
CRR073302Leaf 34.547
CRR073303Juvenile bud 14.122
CRR073304Juvenile bud 24.999
CRR073305Juvenile bud 33.449
CRR073306Third green 11.244
CRR073307Third green 21.712
CRR073308Third green 32.865
CRR073309Second white 12.154
CRR073310Second white 25.189
CRR073311Second white 33.793
CRR073312Silver flowering 10.871
CRR073313Silver flowering 22.178
CRR073314Silver flowering 31.136
CRR073315Gold flowering 16.672
CRR073316Gold flowering 27.787
CRR073317Gold flowering 35.928
CRR073318Tawny withering 16.428
CRR073319Tawny withering 27.839
CRR073320Tawny withering 35.011