Gene detail

Detail information of GWHGAAZE028492

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010322822.1	8.3343E-135	PREDICTED: exocyst complex component EXO70A1 [Solanum lycopersicum]
Swissprot	tr\|Q9LZD3\|E70A1_ARATH	8E-54	Exocyst complex component EXO70A1
trEMBL	tr\|K4C730\|K4C730_SOLLC	3E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc06g062990.1.1}
TAIR10	AT1G72470.1	3E-94	exocyst subunit exo70 family protein D1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	57998145	57999848	-
GWHAAZE00000008	mRNA	57998145	57999848	-
GWHAAZE00000008	exon	57998145	57999848	-
GWHAAZE00000008	CDS	57998145	57999848	-

Transcript Sequence
>GWHTAAZE028526 ATGCTAATGGAACTAACACTCTCTTTCGAGTCTTTCGAGTCCGCCTTCAATATTGTCAACCGCTGGAACTCGAAGCCAAAAGGACGATCTATAGTAAATGGTGATTCCTCCACATTCTATAACTACTTGAAAGCAGTCAACACGATCCAGCAGTCAGCGAGTCTCCCCGGCTATCAGAGCCAATCCAAAGATGCCATCTGTATGGCAGTTGCACGACTCAAGCTCGAGTTTCATGATATAATGACTGCATTAACCAACGCAACCAAGGGTCCGAGTTCTACAAATATTTCGAGTTCAATGAGTGATGGTACATCTAGTAGCCATGAAATAGTACCTTTTGCCTATAACTCACCAACTGCTGTGGTAGCGATTTATAAGCTTAATCATATTGCAAAGACGATGAACTCAGCTGGTTATGTTGGTGAGTGCTTCGAGGTGTACAAGATTGTACGAAAGGGTTTTCTTAAGACCAAGTTAAAGCAACTAGGGATTGAGAAATTGAGAGCCCGTGATACCCAGGGTCTTTTCTTGGAAGAGTTCAAGAAAAAGATTGATCAGTTGATACGTGCTGCTCAAGGGTGTTACTGGATTCTGTTTATAAGCGAAAAGAAACTCCTTTCGCAAATCTTTGGTGGTATTGAACATGATTCGTGTTTTTCTGAAACTATCAGAGATGCCGAAATTCAGTTAATGAACTTTGCCGAAGCTCTAATCACCAGCCGTAGATCACCAGATAAATTGTTTAAATTTTTAGACCTCTCCAAAGGGTTGTCAAACACCCGGGTTTTTCTTTGTCCCAGAAATTATTCGTGGGCTAAGGGGCCTGAAGGTGCACCAGTCCTACACATGAATGATAAGATCGGTGAGGTGGTGAGAACGATTCTGTCAGATTTTGAGAAGAGTGTAGCTTATGAGCTGTCCACCATTCCCGAGGCTGGTGGTACAATTCACTTCTTGACAAAGTATGTAATGGATTATGTCAACCTTATGGTGAGTTACAAGAGAGTTTTATCCGACTTTATCGTGTCAAACCCGTGCACAGCTTTCGGGGATTTGGTAATTCCAGATGTGGAATTTGCACAACTTGAAGGGCAAGGGCAAACTCTAGCACTCCATTTGGTTTTGATCATCGTGGTTTTACGATTCAAATTAGAGGAAAAATCGAAGTACTACAAAGATGCCACTTTGGCTCATTTGTTCATGGCAAACAATCTTCACTACATTGTACAAGTAATAAGAAAATCACCGGAATTGGAAGAGATGATTGGGGAGGAATATATGAATAAGTTGAGTGAAAATTACTTAAGGCAAGCAATTAGTAACTATCAGAGCGCAACTTGCGAGAATATGTTGCACTGTTTGATGGATGAAGAAGAGGGATACAGATTTTTTAGCTCATGTTTTTCTTCAAGGGGGAAGTACTTGAGGAGGAGGGTGAAGTCCTTCAATGCTATGATTGAGGAGATTTGTTCAACCCAAGCAAGATGGGTGGTACAACATTCGGAGCTGAGGGAAGAGCTTTGTCTTTCAATTGTGGAGAAGGTGATTCCTGCTTACGCGTCCTTTCTGAAACGATTCAAGAAGCGTGTAGAGGGAAGAAACTACCCTTACATCAAGTACTCAGTTGAGGACCTTCAGACTTTAATTGTTTCGGATTTCTTTCAAAAGTATCAAAGTCAAATTTATCCTGCCATTTTCTACTGA

Network for GWHGAAZE028492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03081.16	Exo70	189	549	7.10E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07195	EXOC7, EXO70	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name
GO:0006887	biological_process	exocytosis
GO:0000145	cellular_component	exocyst

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.100
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.003
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.032
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.026
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.040
	SRR8316900	Third green stage	0.052
	SRR8316901	Third green stage	0.100
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.079
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.040
	SRR8316905	Silver flowering stage	0.026
	SRR8316906	Gold flowering stage	0.162
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.344
SRP132670	SRR6706286	Control	0.050
	SRR6706287	Light intensity 50%	0.075
	SRR6706288	Light intensity 20%	0.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.043
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.025
	CNS0095597	Whole white alabastrum(diploid) 4	0.091
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.029
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.035
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.069
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.068
	CRR073298	Stem 2	0.164
	CRR073299	Stem 3	0.036
	CRR073300	Leaf 1	0.039
	CRR073301	Leaf 2	0.087
	CRR073302	Leaf 3	0.016
	CRR073303	Juvenile bud 1	0.079
	CRR073304	Juvenile bud 2	0.019
	CRR073305	Juvenile bud 3	0.106
	CRR073306	Third green 1	0.036
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.080
	CRR073309	Second white 1	0.163
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.010
	CRR073315	Gold flowering 1	0.036
	CRR073316	Gold flowering 2	0.017
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000