Gene detail

Detail information of GWHGAAZE028493

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009622455.1	0	PREDICTED: nucleolar GTP-binding protein 1-like [Nicotiana tomentosiformis]
COG	YP_008376532.1	1E-53	GTP-binding protein HSR1-related
Swissprot	tr\|Q9C6I8\|NOG1_ARATH	0	Nucleolar GTP-binding protein 1
trEMBL	tr\|I1LJW2\|I1LJW2_SOYBN	0	Nucleolar GTP-binding protein 1 {ECO:0000256\|PIRNR:PIRNR038919}
TAIR10	AT1G50920.1	0	Nucleolar GTP-binding protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	58044062	58046083	+
GWHAAZE00000008	mRNA	58044062	58046083	+
GWHAAZE00000008	exon	58044062	58046083	+
GWHAAZE00000008	CDS	58044062	58046083	+

Transcript Sequence
>GWHTAAZE028527 ATGGTGCAGTATAATTTCAAGAAAATCACTGTTGTCCCTGGTGGGAAGGACTTCATTGATATTATCCTCTCACGCACCCAAAGGCAAACACCAACAGTTGTTCACAAGGGCTATGCAATCAACCGTATTCGTCAGTTTTATATGCGCAAAGTGAAATACACTCAAACAAATTTCCATGAAAAGCTTTCCACCATCATCGAGGAGTTTCCTCGGCTCGATGATATCCATCCTTTCTATGGCGATCTTCTTCACGTTCTTTATAACAAAGACCATTACAAGCTTGCCCTTGGTCAAATCAATACTGCAAGGAATCTCATTGGTAAGATTGCAAAGGATTATGTTAAGTTGTTGAAGTATGGAGACTCGCTCTACCGATGTAAGGCTTTAAAGGTTGCTGCTCTGGGCCGAATGTGTACTGTCGTAAAGCGAATTGGACCGAGTTTGGCTTATCTTGAACAGATTAGGCAACATATGGCAAGGCTGCCTTCAATTGACCCCAACACGAGGACGATCTTGATTTGCGGGTACCCGAATGTGGGCAAGAGTTCTTTCATTAATAAAATTACTCGGGCTGATGTTGACGTGCAGCCCTATGCTTTCACTACCAAGTCCTTGTTTGTTGGTCATACTGACTATAAATACCTAAGGTACCAGGTAATTGATACTCCAGGGATTTTGGACCGTCCATTTGAAGATCGTAATATCATTGAGATGTGCAGTATTACGGCTCTAGCTCATCTAAGAGCTGCTGTGTTGTTCTTCTTGGATATATCTGGGTCTTGCGGGTACAGCATTGCTCAGCAAGCAGCACTTTTTCACAGTATCAAGTCGCTCTTTATGAACAAGCCGCTGATTATAGTTTGCAACAAGACTGATTTGCAGTCGTTGGATGGGATATCTGAAGAAGACAAGAGGTTGGTTGAAGAGATGAAATCGGAAGCTTTAAAGACTGTGATTGGCCAGGGTGGCGAGGCTACAAATGACCAAGGAGGAGTGCTGTTGACCATGAGCACGTTGACTGAGGAAGGGGTAATTTCGGTAAAAAATGCAGCTTGTGAGAGGCTATTGGATCAAAGGGTGGAATTAAAGATGAAGTCTAAAAAGATAAACGAGTGCTTAAACCGCTTTCATGTTGCAATGCCGAAGCCAAGGGACCAGAAAGAAAGGCCAGCGTGTATACCTCAAGCTGTATTAGAAGCTAAAGCGAAGGAAGCTGAGGAAGCTATACATAAGGCAAAGAAGAAGCTTGAGAAGGATCTAGAGGATGACAATGGTGGTGCAGGTGTGTACTCTGCTAGCTTGAAGAAGCATTATATCTTAGCACATGATGAATGGAAAGAAGATATAATGCCCGAAATCCTCGATGGGCACAATGTATACGACTTTGTTGATCCCGATATTTTGCAAAGGCTTGAGGAATTGGAGAGAGAAGAGGGTCTTCGTCAGGAGCAAGATGGCGGAGATGATGATGTTGAAATGGATTACGATTTGACACCGGAAGAAAAAGAGGCACTGGCCGAGATTAGGAAAAAGAAAAGTCTTCTTATCCAACAGCACAGGATCAAGAAGAGCACTGCCGAGAGCCGACCGACTGTGCCGAGGAAATTTGACAAGGACAAGCAGTTCACATCAAAGAGAATGGGGAGGCAACTTAAGTCTGTAGGGCTTGATCCCAGGTTAGCAATTGAACGCGCCCGTAGCAAATCAAGGGGACGTAAGAGGGAAAGATCGATTGATAGAGATGATGCTATGGATGTCGATGGTGAACAATCTAATAAGAAGAGACTGCGTACCTCAATTTCACGGTCAAGATCGGTGTCTAGACCGCCACACGAGATTGTACCGGGAGAGGGATACAGGGATTCGGCTCAGAAGATGAAGGCCATGGTATTGGCTAAGAAATCATCGAAAAAGAGAAACAAAGATGCCCGGCGGGGAGAAGCAGATAGAGTCATTCCAACGCTTAGACCGAAGCACTTGTTCTCTGGGAAGCGAGGCAAGGGGAAGACTGATCGACGCTAG

Network for GWHGAAZE028493

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17835.2	NOG1_N	6	165	4.10E-58
PF06858.15	NOG1	236	292	1.70E-24
PF08155.12	NOGCT	414	467	1.40E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06943	NOG1	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005730	cellular_component	nucleolus
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.930
	SRR3591706	second leaf	8.521
	SRR3591707	mature leaf	8.830
	SRR3591708	Shoot apex	15.774
	SRR3591709	Stem	10.464
	SRR3591710	White floral bud	9.863
	SRR3591711	White flower	14.029
	SRR3591712	Green floral bud	20.236
	SRR3591713	Yellow flower	11.331
SRP173429	SRR8316895	Juvenile bud stage	12.933
	SRR8316896	Juvenile bud stage	18.608
	SRR8316897	Juvenile bud stage	8.422
	SRR8316894	Third green stage	6.051
	SRR8316900	Third green stage	19.594
	SRR8316901	Third green stage	16.755
	SRR8316898	Complete white stage	2.437
	SRR8316899	Complete white stage	16.605
	SRR8316903	Complete white stage	6.035
	SRR8316902	Silver flowering stage	3.648
	SRR8316904	Silver flowering stage	4.813
	SRR8316905	Silver flowering stage	2.510
	SRR8316906	Gold flowering stage	9.125
	SRR8316907	Gold flowering stage	9.092
	SRR8316908	Gold flowering stage	13.696
SRP132670	SRR6706286	Control	19.404
	SRR6706287	Light intensity 50%	18.355
	SRR6706288	Light intensity 20%	19.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.478
	CNS0095593	Slightly white alabastrum(diploid) 2	10.606
	CNS0095594	Slightly white alabastrum(diploid) 3	13.309
	CNS0095595	Whole white alabastrum(diploid) 2	11.664
	CNS0095596	Whole white alabastrum(diploid) 3	11.246
	CNS0095597	Whole white alabastrum(diploid) 4	6.072
	CNS0095598	Silvery flower (diploied) 1	12.123
	CNS0095599	Silvery flower (diploied) 2	11.067
	CNS0095600	Silvery flower (diploied) 3	8.744
	CNS0095601	Golden flower (diploid) 1	6.536
	CNS0095602	Golden flower (diploid) 2	8.666
	CNS0095603	Golden flower (diploid) 3	7.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.835
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.540
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.834
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.430
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.911
	CNS0095610	Silvery flower (tetraploid) 1	12.068
	CNS0095611	Silvery flower (tetraploid) 2	9.634
	CNS0095612	Silvery flower (tetraploid) 3	7.388
	CNS0095613	Golden flower (tetraploid) 1	4.669
	CNS0095614	Golden flower (tetraploid) 2	9.709
	CNS0095615	Golden flower (tetraploid) 3	6.075
CRA001975	CRR073297	Stem 1	22.327
	CRR073298	Stem 2	18.962
	CRR073299	Stem 3	18.558
	CRR073300	Leaf 1	17.047
	CRR073301	Leaf 2	16.379
	CRR073302	Leaf 3	15.201
	CRR073303	Juvenile bud 1	16.186
	CRR073304	Juvenile bud 2	7.600
	CRR073305	Juvenile bud 3	19.079
	CRR073306	Third green 1	3.683
	CRR073307	Third green 2	1.622
	CRR073308	Third green 3	3.013
	CRR073309	Second white 1	4.439
	CRR073310	Second white 2	4.928
	CRR073311	Second white 3	6.463
	CRR073312	Silver flowering 1	5.613
	CRR073313	Silver flowering 2	5.786
	CRR073314	Silver flowering 3	4.861
	CRR073315	Gold flowering 1	8.487
	CRR073316	Gold flowering 2	11.063
	CRR073317	Gold flowering 3	8.361
	CRR073318	Tawny withering 1	17.032
	CRR073319	Tawny withering 2	13.910
	CRR073320	Tawny withering 3	24.803