Detail information of GWHGAAZE028495


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283798.10PREDICTED: nuclear pore complex protein NUP85 [Vitis vinifera]
Swissprottr|Q8RXH2|NUP85_ARATH0Nuclear pore complex protein NUP85
trEMBLtr|D7SU98|D7SU98_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI20847.3}
TAIR10AT4G32910.10Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5811161158130688+
GWHAAZE00000008mRNA5811161158130688+
GWHAAZE00000008exon5811161158112002+
GWHAAZE00000008exon5811770858117810+
GWHAAZE00000008exon5811821258118322+
GWHAAZE00000008exon5811843558118518+
GWHAAZE00000008exon5811897958119050+
GWHAAZE00000008exon5811918658119242+
GWHAAZE00000008exon5812087658120995+
GWHAAZE00000008exon5812131458121514+
GWHAAZE00000008exon5812193758122047+
GWHAAZE00000008exon5812213158122168+
GWHAAZE00000008exon5812268858122844+
GWHAAZE00000008exon5812729958127400+
GWHAAZE00000008exon5812833258128388+
GWHAAZE00000008exon5812847058128616+
GWHAAZE00000008exon5812947158129541+
GWHAAZE00000008exon5812992858130015+
GWHAAZE00000008exon5813009358130149+
GWHAAZE00000008exon5813049458130688+
GWHAAZE00000008CDS5811161158112002+
GWHAAZE00000008CDS5811770858117810+
GWHAAZE00000008CDS5811821258118322+
GWHAAZE00000008CDS5811843558118518+
GWHAAZE00000008CDS5811897958119050+
GWHAAZE00000008CDS5811918658119242+
GWHAAZE00000008CDS5812087658120995+
GWHAAZE00000008CDS5812131458121514+
GWHAAZE00000008CDS5812193758122047+
GWHAAZE00000008CDS5812213158122168+
GWHAAZE00000008CDS5812268858122844+
GWHAAZE00000008CDS5812729958127400+
GWHAAZE00000008CDS5812833258128388+
GWHAAZE00000008CDS5812847058128616+
GWHAAZE00000008CDS5812947158129541+
GWHAAZE00000008CDS5812992858130015+
GWHAAZE00000008CDS5813009358130149+
GWHAAZE00000008CDS5813049458130688+
Transcript Sequence

Network for GWHGAAZE028495

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07575.14Nucleopor_Nup85876821.60E-151
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14304NUP85 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.796
SRR3591706second leaf13.535
SRR3591707mature leaf14.463
SRR3591708Shoot apex46.286
SRR3591709Stem23.653
SRR3591710White floral bud24.661
SRR3591711White flower29.818
SRR3591712Green floral bud31.810
SRR3591713Yellow flower25.050
SRP173429 SRR8316895Juvenile bud stage 16.741
SRR8316896Juvenile bud stage 24.656
SRR8316897Juvenile bud stage 12.263
SRR8316894Third green stage 8.116
SRR8316900Third green stage 26.827
SRR8316901Third green stage 25.242
SRR8316898Complete white stage 8.600
SRR8316899Complete white stage 35.178
SRR8316903Complete white stage 11.466
SRR8316902Silver flowering stage6.174
SRR8316904Silver flowering stage8.741
SRR8316905Silver flowering stage4.087
SRR8316906Gold flowering stage 15.132
SRR8316907Gold flowering stage 13.848
SRR8316908Gold flowering stage 17.252
SRP132670SRR6706286Control22.384
SRR6706287Light intensity 50%24.325
SRR6706288Light intensity 20%26.437
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.766
CNS0095593Slightly white alabastrum(diploid) 216.804
CNS0095594Slightly white alabastrum(diploid) 317.795
CNS0095595Whole white alabastrum(diploid) 217.752
CNS0095596Whole white alabastrum(diploid) 318.439
CNS0095597Whole white alabastrum(diploid) 420.270
CNS0095598Silvery flower (diploied) 115.780
CNS0095599Silvery flower (diploied) 214.737
CNS0095600Silvery flower (diploied) 321.611
CNS0095601Golden flower (diploid) 115.875
CNS0095602Golden flower (diploid) 221.302
CNS0095603Golden flower (diploid) 318.832
CNS0095604Slightly white alabastrum(tetraploid) 120.414
CNS0095605Slightly white alabastrum(tetraploid) 219.472
CNS0095606Slightly white alabastrum(tetraploid) 326.370
CNS0095607Whole white alabastrum(tetraploid) 121.729
CNS0095608Whole white alabastrum(tetraploid) 218.333
CNS0095609Whole white alabastrum(tetraploid) 323.112
CNS0095610Silvery flower (tetraploid) 122.512
CNS0095611Silvery flower (tetraploid) 226.107
CNS0095612Silvery flower (tetraploid) 319.866
CNS0095613Golden flower (tetraploid) 111.750
CNS0095614Golden flower (tetraploid) 217.734
CNS0095615Golden flower (tetraploid) 315.718
CRA001975CRR073297Stem 132.426
CRR073298Stem 230.912
CRR073299Stem 330.506
CRR073300Leaf 136.926
CRR073301Leaf 232.779
CRR073302Leaf 337.520
CRR073303Juvenile bud 136.723
CRR073304Juvenile bud 226.326
CRR073305Juvenile bud 335.657
CRR073306Third green 110.121
CRR073307Third green 27.724
CRR073308Third green 39.049
CRR073309Second white 116.342
CRR073310Second white 214.090
CRR073311Second white 313.357
CRR073312Silver flowering 111.307
CRR073313Silver flowering 213.221
CRR073314Silver flowering 38.767
CRR073315Gold flowering 116.050
CRR073316Gold flowering 225.085
CRR073317Gold flowering 318.650
CRR073318Tawny withering 125.497
CRR073319Tawny withering 217.442
CRR073320Tawny withering 322.770