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Detail information of GWHGAAZE028495
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002283798.1
0
PREDICTED: nuclear pore complex protein NUP85 [Vitis vinifera]
Swissprot
tr|Q8RXH2|NUP85_ARATH
0
Nuclear pore complex protein NUP85
trEMBL
tr|D7SU98|D7SU98_VITVI
0
Putative uncharacterized protein {ECO:0000313|EMBL:CBI20847.3}
TAIR10
AT4G32910.1
0
Without detailed annotation
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000008
gene
58111611
58130688
+
GWHAAZE00000008
mRNA
58111611
58130688
+
GWHAAZE00000008
exon
58111611
58112002
+
GWHAAZE00000008
exon
58117708
58117810
+
GWHAAZE00000008
exon
58118212
58118322
+
GWHAAZE00000008
exon
58118435
58118518
+
GWHAAZE00000008
exon
58118979
58119050
+
GWHAAZE00000008
exon
58119186
58119242
+
GWHAAZE00000008
exon
58120876
58120995
+
GWHAAZE00000008
exon
58121314
58121514
+
GWHAAZE00000008
exon
58121937
58122047
+
GWHAAZE00000008
exon
58122131
58122168
+
GWHAAZE00000008
exon
58122688
58122844
+
GWHAAZE00000008
exon
58127299
58127400
+
GWHAAZE00000008
exon
58128332
58128388
+
GWHAAZE00000008
exon
58128470
58128616
+
GWHAAZE00000008
exon
58129471
58129541
+
GWHAAZE00000008
exon
58129928
58130015
+
GWHAAZE00000008
exon
58130093
58130149
+
GWHAAZE00000008
exon
58130494
58130688
+
GWHAAZE00000008
CDS
58111611
58112002
+
GWHAAZE00000008
CDS
58117708
58117810
+
GWHAAZE00000008
CDS
58118212
58118322
+
GWHAAZE00000008
CDS
58118435
58118518
+
GWHAAZE00000008
CDS
58118979
58119050
+
GWHAAZE00000008
CDS
58119186
58119242
+
GWHAAZE00000008
CDS
58120876
58120995
+
GWHAAZE00000008
CDS
58121314
58121514
+
GWHAAZE00000008
CDS
58121937
58122047
+
GWHAAZE00000008
CDS
58122131
58122168
+
GWHAAZE00000008
CDS
58122688
58122844
+
GWHAAZE00000008
CDS
58127299
58127400
+
GWHAAZE00000008
CDS
58128332
58128388
+
GWHAAZE00000008
CDS
58128470
58128616
+
GWHAAZE00000008
CDS
58129471
58129541
+
GWHAAZE00000008
CDS
58129928
58130015
+
GWHAAZE00000008
CDS
58130093
58130149
+
GWHAAZE00000008
CDS
58130494
58130688
+
Transcript Sequence
>GWHTAAZE028529 ATGCCCGGCCTTACATCACATCCGGGTGGTGATTCCTCCATAGTCCCATTCTCGCCGGAAGTAAAGGAACCAGAAGTAGTCTACCAACTCCACCACGGCCTTAAATCCCCAATTTCTCCTCGCCTCTCGCTCTCCTGGTCACGCGGCAACTCCCTTCGAGTGTCAGTCCTCCGGCAATCTGCCGGAGATTTATCGGACGGTGGTGGTGAAGATGGCGGAGGAAAAGTGGTGGAGTTGAAGCTCGGTAATCGTGGTGATAGTGAGATTGATGATGCTCAGTGGCGGAGGATTGCGTACGGTTCGGTCTCGCCTTTTGCTCTTCTTCAAAGTCGGAAGAACAACATGGAAGCTTTGGCGAAAATGTCGAGTTCGTCTCCTTACGATGTTGATTGGTGGGAATTCGTTATCGAATACAGCAAGGAGATAAATTCGCTACTTGGTGGTCGTAAGTTACCTCCCAGTTCAGCTATTGAAGACCCAAAGACAGTTTTAAAGAAAGTTGAGAAGCCAACCTGTTTGAAAGCTGCATGGGAGCTGATGGAAATATTTTATGCAGACAAGCAATCCCAATCTTGGGTCCCTGAACGGCTTGTTGATTGGTTAGCTGATTATGATTGTTTATTCTGCGTGAGTCAACCAACAGTCCATTCGAAACTTGTGGATTTTCAACAGGATCTTGTCACTCTACAGGTGGTTGAAGATGATCCTAAATATTGGGAAGCAATATCATCGGCACTGGCTGTTGGCTGGCTAGATATTGCGGTGAAATTGATGCGCTTGCATGGATCTTATCAACTCAATCAGCTAGGGAAACGCGAGACAGAGAACGGACTGGTAGAAGCAGTAGCTGTTCTTATTTCAAAAATGCCACGCATGCGTCCTGATATATCAGCAGAAAAATTAGGCGAATGCTATAAAAGCAAGCCTGATTTTGTCAAGGCATGGGAGAAGTGGAGGGCACAAATAACTAAGCTGGACTGCAGTGCATTCTGGCTTCAATGTGATCATCAGCAGACTAGGGAAGGCTTGAAAAATATGCTACAAATTATGTTGGGAAATGCTAATATTCTCTCGACTGCGACATTTCATTGGATAGAGCTCTATATTTCTCACTTTCTATACATCAGGCCTTTCACTATGGGTTTTGAGAGTATGTACAACCTAGCCCAGAAATGCATGCAATTAAAACCAGCTTCTTCTTCCCATAAGTTGATAGAACTTATGATTGGAATTCTTGGAGAAAATACAGAGGTTGTCTTAGCAGAATGCTCAAGATCATTTGGCCCTTGGATGATAGCCCATGCTATAGAGTTGTTGACGGCTGGGAGTACTCAAGCAGAAATTGTTTTAAATGAAGAGAGACATAACTTGGGGGGAATAAGCATAGAGGAGCTTCATCGACTTGTCTATGCTCAAGTTCTATCTTCTCACGCATTAACTTGGCAAATTGCTCCAATATATTTGACATCGTGCATGAAGCAAGGAATGGGCTTGTTGGAGATTTTGTTGTACATGCAACCTGTACAACATAACCATGTACTGCTCAAGAACCTGGAGATTTGCCGTCTGTATGAACTTGACAGTGTTAGTTCGAGCTTGATGAAGATTGCTGGAGTGCATCACTGGAAGCACGGTAGGAAAGGTTGTGGAGTCTTCTGGCTTCAACAAGCTCGGGATGAAGTTCGTTTAAACAGAATTGCACAGCAGTTGTTTGATTTTGTTGGAAAGTCAGTCTCTGATGAAAGTTTCAAGCAATGGGAAGGACTGATTGAGCTGTTGGGTTCAGAGTCAAGTACTGCTGGGGGTCTTGAGTTTCTGCACAAGTACAGAGATTTTAAGAGATCCCTTAAGCAGGTCCATGATGGAGTAGCTACTGATGCTGCTAGAAGAGCCACTGAAACCCTTGTATTGCTTATGAAAAACCCTTCTACACCTCAACGATTTTGGCTTCCTCTATTATACGACTCATTGACGTTGCTAAACTGGAGGGAGGGTCCTTTGCTAAACGTTTCCCAGACGAACCTGTTGCTGAATAAACTTCAAGAGCTTTCAGTGGCGAAGTTGAGCCCCGACTTTGTGGAAGCGCACTTGCCACCCGAGGCCTTGAGTTCTGTCAGGCTCGCTCTCGCCACTAATCTAGGACGAGCTATCCTTGAGGAATGA
Network for GWHGAAZE028495
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF07575.14
Nucleopor_Nup85
87
682
1.60E-151
Protein Sequence
>GWHPAAZE028513 MPGLTSHPGGDSSIVPFSPEVKEPEVVYQLHHGLKSPISPRLSLSWSRGNSLRVSVLRQSAGDLSDGGGEDGGGKVVELKLGNRGDSEIDDAQWRRIAYGSVSPFALLQSRKNNMEALAKMSSSSPYDVDWWEFVIEYSKEINSLLGGRKLPPSSAIEDPKTVLKKVEKPTCLKAAWELMEIFYADKQSQSWVPERLVDWLADYDCLFCVSQPTVHSKLVDFQQDLVTLQVVEDDPKYWEAISSALAVGWLDIAVKLMRLHGSYQLNQLGKRETENGLVEAVAVLISKMPRMRPDISAEKLGECYKSKPDFVKAWEKWRAQITKLDCSAFWLQCDHQQTREGLKNMLQIMLGNANILSTATFHWIELYISHFLYIRPFTMGFESMYNLAQKCMQLKPASSSHKLIELMIGILGENTEVVLAECSRSFGPWMIAHAIELLTAGSTQAEIVLNEERHNLGGISIEELHRLVYAQVLSSHALTWQIAPIYLTSCMKQGMGLLEILLYMQPVQHNHVLLKNLEICRLYELDSVSSSLMKIAGVHHWKHGRKGCGVFWLQQARDEVRLNRIAQQLFDFVGKSVSDESFKQWEGLIELLGSESSTAGGLEFLHKYRDFKRSLKQVHDGVATDAARRATETLVLLMKNPSTPQRFWLPLLYDSLTLLNWREGPLLNVSQTNLLLNKLQELSVAKLSPDFVEAHLPPEALSSVRLALATNLGRAILEE
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K14304
NUP85
RNA transport
map03013
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
32.796
SRR3591706
second leaf
13.535
SRR3591707
mature leaf
14.463
SRR3591708
Shoot apex
46.286
SRR3591709
Stem
23.653
SRR3591710
White floral bud
24.661
SRR3591711
White flower
29.818
SRR3591712
Green floral bud
31.810
SRR3591713
Yellow flower
25.050
SRP173429
SRR8316895
Juvenile bud stage
16.741
SRR8316896
Juvenile bud stage
24.656
SRR8316897
Juvenile bud stage
12.263
SRR8316894
Third green stage
8.116
SRR8316900
Third green stage
26.827
SRR8316901
Third green stage
25.242
SRR8316898
Complete white stage
8.600
SRR8316899
Complete white stage
35.178
SRR8316903
Complete white stage
11.466
SRR8316902
Silver flowering stage
6.174
SRR8316904
Silver flowering stage
8.741
SRR8316905
Silver flowering stage
4.087
SRR8316906
Gold flowering stage
15.132
SRR8316907
Gold flowering stage
13.848
SRR8316908
Gold flowering stage
17.252
SRP132670
SRR6706286
Control
22.384
SRR6706287
Light intensity 50%
24.325
SRR6706288
Light intensity 20%
26.437
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
16.766
CNS0095593
Slightly white alabastrum(diploid) 2
16.804
CNS0095594
Slightly white alabastrum(diploid) 3
17.795
CNS0095595
Whole white alabastrum(diploid) 2
17.752
CNS0095596
Whole white alabastrum(diploid) 3
18.439
CNS0095597
Whole white alabastrum(diploid) 4
20.270
CNS0095598
Silvery flower (diploied) 1
15.780
CNS0095599
Silvery flower (diploied) 2
14.737
CNS0095600
Silvery flower (diploied) 3
21.611
CNS0095601
Golden flower (diploid) 1
15.875
CNS0095602
Golden flower (diploid) 2
21.302
CNS0095603
Golden flower (diploid) 3
18.832
CNS0095604
Slightly white alabastrum(tetraploid) 1
20.414
CNS0095605
Slightly white alabastrum(tetraploid) 2
19.472
CNS0095606
Slightly white alabastrum(tetraploid) 3
26.370
CNS0095607
Whole white alabastrum(tetraploid) 1
21.729
CNS0095608
Whole white alabastrum(tetraploid) 2
18.333
CNS0095609
Whole white alabastrum(tetraploid) 3
23.112
CNS0095610
Silvery flower (tetraploid) 1
22.512
CNS0095611
Silvery flower (tetraploid) 2
26.107
CNS0095612
Silvery flower (tetraploid) 3
19.866
CNS0095613
Golden flower (tetraploid) 1
11.750
CNS0095614
Golden flower (tetraploid) 2
17.734
CNS0095615
Golden flower (tetraploid) 3
15.718
CRA001975
CRR073297
Stem 1
32.426
CRR073298
Stem 2
30.912
CRR073299
Stem 3
30.506
CRR073300
Leaf 1
36.926
CRR073301
Leaf 2
32.779
CRR073302
Leaf 3
37.520
CRR073303
Juvenile bud 1
36.723
CRR073304
Juvenile bud 2
26.326
CRR073305
Juvenile bud 3
35.657
CRR073306
Third green 1
10.121
CRR073307
Third green 2
7.724
CRR073308
Third green 3
9.049
CRR073309
Second white 1
16.342
CRR073310
Second white 2
14.090
CRR073311
Second white 3
13.357
CRR073312
Silver flowering 1
11.307
CRR073313
Silver flowering 2
13.221
CRR073314
Silver flowering 3
8.767
CRR073315
Gold flowering 1
16.050
CRR073316
Gold flowering 2
25.085
CRR073317
Gold flowering 3
18.650
CRR073318
Tawny withering 1
25.497
CRR073319
Tawny withering 2
17.442
CRR073320
Tawny withering 3
22.770