Gene detail

Detail information of GWHGAAZE028502

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009613594.1	4.2738E-120	PREDICTED: adenylyl-sulfate kinase 3 [Nicotiana tomentosiformis]
COG	YP_004272213.1	4E-72	adenylylsulfate kinase
Swissprot	tr\|Q9SRW7\|APK3_ARATH	8E-115	Adenylyl-sulfate kinase 3
trEMBL	tr\|A0A068V0Y1\|A0A068V0Y1_COFCA	2E-120	Adenylyl-sulfate kinase {ECO:0000256\|RuleBase:RU004347}
TAIR10	AT3G03900.1	5E-91	adenosine-5'-phosphosulfate (APS) kinase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	58409259	58414058	+
GWHAAZE00000008	mRNA	58409259	58414058	+
GWHAAZE00000008	exon	58409259	58409382	+
GWHAAZE00000008	exon	58410412	58410561	+
GWHAAZE00000008	exon	58411057	58411204	+
GWHAAZE00000008	exon	58411296	58411342	+
GWHAAZE00000008	exon	58413831	58413877	+
GWHAAZE00000008	exon	58413954	58414058	+
GWHAAZE00000008	CDS	58409259	58409382	+
GWHAAZE00000008	CDS	58410412	58410561	+
GWHAAZE00000008	CDS	58411057	58411204	+
GWHAAZE00000008	CDS	58411296	58411342	+
GWHAAZE00000008	CDS	58413831	58413877	+
GWHAAZE00000008	CDS	58413954	58414058	+

Transcript Sequence
>GWHTAAZE028536 ATGTCTACCTTGGGAAATCCAACAAATATTTTCTGGCATGAATGTCCGGTTGGCAAGGTAGATAGGCAAAAGCTACTTAACCAACAGGGATGTGTTGTATGGATTACAGGTTTGAGTGGTTCAGGTAAAAGTACACTCGCATGCTCTCTAGGTAGGGAATTGCATTCCAGGGGAAAACTATCCTACGTTCTTGACGGTGACAACCTTAGGCATGGACTAAACAAGAATCTTGGCTTCCTACCTGAAGATCGAACTGAAAATATACGCAGAGTTGGGGAAGTTGCAAAGCTATTTGCTGATGCTGGCTTGATATGCATTGCGAGTCTTATCTCTCCTTATAGAAAGGACCGTGATGCTTGTCGTGCAATGCTGGCCAATCCAAATTTTATCGAGGCAATATGCTTCTCATTCTTACAGATAAAAGACCCCAAAGGGCTTTACAAGCTTGCACGCGCTGGAAAGATTAAAGGTTTTACCGGCATAGACGATCCTTATGAGCCGCCTTTGAATTGCGAGATTGAAATACAACAGCAGGACAACGGAGTTTGCCCAGCGCCTTGTGAGATGGCGGGGCAAGTAGTATCTTACTTGGACGAGAATGGATTTCTTCAATCTCATTGA

Network for GWHGAAZE028502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01583.21	APS_kinase	29	179	1.40E-61

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00860	cysC	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Sulfur metabolism	map00920
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0000103	biological_process	sulfate assimilation
GO:0004020	molecular_function	adenylylsulfate kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.041
	SRR3591706	second leaf	28.217
	SRR3591707	mature leaf	14.378
	SRR3591708	Shoot apex	15.537
	SRR3591709	Stem	11.774
	SRR3591710	White floral bud	15.431
	SRR3591711	White flower	20.759
	SRR3591712	Green floral bud	20.873
	SRR3591713	Yellow flower	27.563
SRP173429	SRR8316895	Juvenile bud stage	15.688
	SRR8316896	Juvenile bud stage	30.169
	SRR8316897	Juvenile bud stage	11.399
	SRR8316894	Third green stage	13.034
	SRR8316900	Third green stage	46.107
	SRR8316901	Third green stage	47.283
	SRR8316898	Complete white stage	13.347
	SRR8316899	Complete white stage	37.028
	SRR8316903	Complete white stage	23.143
	SRR8316902	Silver flowering stage	14.837
	SRR8316904	Silver flowering stage	20.283
	SRR8316905	Silver flowering stage	11.187
	SRR8316906	Gold flowering stage	49.680
	SRR8316907	Gold flowering stage	46.425
	SRR8316908	Gold flowering stage	46.621
SRP132670	SRR6706286	Control	26.958
	SRR6706287	Light intensity 50%	25.872
	SRR6706288	Light intensity 20%	28.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.304
	CNS0095593	Slightly white alabastrum(diploid) 2	34.495
	CNS0095594	Slightly white alabastrum(diploid) 3	28.693
	CNS0095595	Whole white alabastrum(diploid) 2	38.299
	CNS0095596	Whole white alabastrum(diploid) 3	39.615
	CNS0095597	Whole white alabastrum(diploid) 4	39.371
	CNS0095598	Silvery flower (diploied) 1	22.053
	CNS0095599	Silvery flower (diploied) 2	22.669
	CNS0095600	Silvery flower (diploied) 3	32.318
	CNS0095601	Golden flower (diploid) 1	18.093
	CNS0095602	Golden flower (diploid) 2	24.731
	CNS0095603	Golden flower (diploid) 3	21.961
	CNS0095604	Slightly white alabastrum(tetraploid) 1	40.381
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.869
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.936
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.071
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.204
	CNS0095610	Silvery flower (tetraploid) 1	48.080
	CNS0095611	Silvery flower (tetraploid) 2	41.910
	CNS0095612	Silvery flower (tetraploid) 3	77.554
	CNS0095613	Golden flower (tetraploid) 1	45.175
	CNS0095614	Golden flower (tetraploid) 2	29.132
	CNS0095615	Golden flower (tetraploid) 3	51.934
CRA001975	CRR073297	Stem 1	21.304
	CRR073298	Stem 2	21.633
	CRR073299	Stem 3	24.687
	CRR073300	Leaf 1	30.313
	CRR073301	Leaf 2	29.735
	CRR073302	Leaf 3	25.680
	CRR073303	Juvenile bud 1	24.909
	CRR073304	Juvenile bud 2	31.950
	CRR073305	Juvenile bud 3	14.651
	CRR073306	Third green 1	19.768
	CRR073307	Third green 2	20.494
	CRR073308	Third green 3	20.544
	CRR073309	Second white 1	19.040
	CRR073310	Second white 2	25.925
	CRR073311	Second white 3	18.489
	CRR073312	Silver flowering 1	16.120
	CRR073313	Silver flowering 2	15.960
	CRR073314	Silver flowering 3	11.652
	CRR073315	Gold flowering 1	22.142
	CRR073316	Gold flowering 2	24.070
	CRR073317	Gold flowering 3	17.357
	CRR073318	Tawny withering 1	23.455
	CRR073319	Tawny withering 2	26.838
	CRR073320	Tawny withering 3	20.495