Detail information of GWHGAAZE028523


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009784928.15.13547E-35PREDICTED: protein EMBRYONIC FLOWER 1-like [Nicotiana sylvestris]
Swissprottr|Q9LYD9|EMF1_ARATH8E-12Protein EMBRYONIC FLOWER 1
trEMBLtr|F6H3F0|F6H3F0_VITVI6E-34Putative uncharacterized protein {ECO:0000313|EMBL:CCB46714.1}
TAIR10AT5G11530.16E-11embryonic flower 1 (EMF1)

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5897954058981383-
GWHAAZE00000008mRNA5897954058981383-
GWHAAZE00000008exon5897954058979583-
GWHAAZE00000008exon5897974558980160-
GWHAAZE00000008exon5898120858981383-
GWHAAZE00000008CDS5898120858981383-
GWHAAZE00000008CDS5897974558980160-
GWHAAZE00000008CDS5897954058979583-
Transcript Sequence

Network for GWHGAAZE028523

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0146


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.090
SRR3591706second leaf2.392
SRR3591707mature leaf8.224
SRR3591708Shoot apex2.806
SRR3591709Stem3.248
SRR3591710White floral bud6.908
SRR3591711White flower9.746
SRR3591712Green floral bud3.411
SRR3591713Yellow flower9.245
SRP173429 SRR8316895Juvenile bud stage 5.575
SRR8316896Juvenile bud stage 4.856
SRR8316897Juvenile bud stage 2.905
SRR8316894Third green stage 4.183
SRR8316900Third green stage 5.290
SRR8316901Third green stage 5.404
SRR8316898Complete white stage 2.894
SRR8316899Complete white stage 9.840
SRR8316903Complete white stage 8.211
SRR8316902Silver flowering stage4.923
SRR8316904Silver flowering stage11.822
SRR8316905Silver flowering stage5.056
SRR8316906Gold flowering stage 7.450
SRR8316907Gold flowering stage 9.898
SRR8316908Gold flowering stage 9.816
SRP132670SRR6706286Control7.045
SRR6706287Light intensity 50%8.085
SRR6706288Light intensity 20%8.413
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.948
CNS0095593Slightly white alabastrum(diploid) 22.152
CNS0095594Slightly white alabastrum(diploid) 31.550
CNS0095595Whole white alabastrum(diploid) 22.063
CNS0095596Whole white alabastrum(diploid) 31.792
CNS0095597Whole white alabastrum(diploid) 40.785
CNS0095598Silvery flower (diploied) 19.718
CNS0095599Silvery flower (diploied) 24.253
CNS0095600Silvery flower (diploied) 38.226
CNS0095601Golden flower (diploid) 14.561
CNS0095602Golden flower (diploid) 29.322
CNS0095603Golden flower (diploid) 37.768
CNS0095604Slightly white alabastrum(tetraploid) 11.548
CNS0095605Slightly white alabastrum(tetraploid) 20.744
CNS0095606Slightly white alabastrum(tetraploid) 36.562
CNS0095607Whole white alabastrum(tetraploid) 10.618
CNS0095608Whole white alabastrum(tetraploid) 20.075
CNS0095609Whole white alabastrum(tetraploid) 33.017
CNS0095610Silvery flower (tetraploid) 16.166
CNS0095611Silvery flower (tetraploid) 24.607
CNS0095612Silvery flower (tetraploid) 35.515
CNS0095613Golden flower (tetraploid) 12.236
CNS0095614Golden flower (tetraploid) 21.919
CNS0095615Golden flower (tetraploid) 34.749
CRA001975CRR073297Stem 15.911
CRR073298Stem 24.773
CRR073299Stem 30.997
CRR073300Leaf 16.793
CRR073301Leaf 24.599
CRR073302Leaf 32.412
CRR073303Juvenile bud 11.582
CRR073304Juvenile bud 21.458
CRR073305Juvenile bud 32.651
CRR073306Third green 11.959
CRR073307Third green 20.423
CRR073308Third green 31.932
CRR073309Second white 11.178
CRR073310Second white 21.933
CRR073311Second white 32.183
CRR073312Silver flowering 13.197
CRR073313Silver flowering 20.304
CRR073314Silver flowering 31.000
CRR073315Gold flowering 10.747
CRR073316Gold flowering 22.143
CRR073317Gold flowering 30.329
CRR073318Tawny withering 10.983
CRR073319Tawny withering 20.580
CRR073320Tawny withering 31.031