Detail information of GWHGAAZE028538


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007035380.19.63942E-71F-box and associated interaction domains-containing protein, putative isoform 2, partial [Theobroma cacao]
Swissprottr|Q9SFC7|FB135_ARATH2E-28F-box protein At3g07870
trEMBLtr|A0A061EN93|A0A061EN93_THECC4E-71F-box and associated interaction domains-containing protein, putative isoform 2 {ECO:0000313|EMBL:EOY06306.1} (Fragment)
TAIR10AT3G07870.15E-26F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5938985759391056-
GWHAAZE00000008mRNA5938985759391056-
GWHAAZE00000008exon5938985759391056-
GWHAAZE00000008CDS5938985759391056-
Transcript Sequence

Network for GWHGAAZE028538

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07734.14FBA_12453551.70E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.142
SRR3591706second leaf0.956
SRR3591707mature leaf2.292
SRR3591708Shoot apex2.295
SRR3591709Stem4.148
SRR3591710White floral bud6.200
SRR3591711White flower9.065
SRR3591712Green floral bud6.585
SRR3591713Yellow flower7.590
SRP173429 SRR8316895Juvenile bud stage 4.389
SRR8316896Juvenile bud stage 6.361
SRR8316897Juvenile bud stage 3.381
SRR8316894Third green stage 2.774
SRR8316900Third green stage 7.102
SRR8316901Third green stage 8.112
SRR8316898Complete white stage 2.855
SRR8316899Complete white stage 11.252
SRR8316903Complete white stage 6.732
SRR8316902Silver flowering stage2.669
SRR8316904Silver flowering stage6.736
SRR8316905Silver flowering stage1.756
SRR8316906Gold flowering stage 7.801
SRR8316907Gold flowering stage 6.054
SRR8316908Gold flowering stage 8.460
SRP132670SRR6706286Control6.993
SRR6706287Light intensity 50%6.328
SRR6706288Light intensity 20%6.875
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.174
CNS0095593Slightly white alabastrum(diploid) 24.307
CNS0095594Slightly white alabastrum(diploid) 35.519
CNS0095595Whole white alabastrum(diploid) 24.085
CNS0095596Whole white alabastrum(diploid) 33.555
CNS0095597Whole white alabastrum(diploid) 43.729
CNS0095598Silvery flower (diploied) 18.717
CNS0095599Silvery flower (diploied) 27.321
CNS0095600Silvery flower (diploied) 311.000
CNS0095601Golden flower (diploid) 13.747
CNS0095602Golden flower (diploid) 28.567
CNS0095603Golden flower (diploid) 38.210
CNS0095604Slightly white alabastrum(tetraploid) 16.874
CNS0095605Slightly white alabastrum(tetraploid) 25.950
CNS0095606Slightly white alabastrum(tetraploid) 314.291
CNS0095607Whole white alabastrum(tetraploid) 14.769
CNS0095608Whole white alabastrum(tetraploid) 23.676
CNS0095609Whole white alabastrum(tetraploid) 37.603
CNS0095610Silvery flower (tetraploid) 110.627
CNS0095611Silvery flower (tetraploid) 212.949
CNS0095612Silvery flower (tetraploid) 38.053
CNS0095613Golden flower (tetraploid) 14.810
CNS0095614Golden flower (tetraploid) 29.667
CNS0095615Golden flower (tetraploid) 35.601
CRA001975CRR073297Stem 15.331
CRR073298Stem 25.201
CRR073299Stem 33.681
CRR073300Leaf 16.380
CRR073301Leaf 25.834
CRR073302Leaf 32.969
CRR073303Juvenile bud 12.488
CRR073304Juvenile bud 23.741
CRR073305Juvenile bud 36.318
CRR073306Third green 11.087
CRR073307Third green 20.809
CRR073308Third green 31.508
CRR073309Second white 10.984
CRR073310Second white 21.399
CRR073311Second white 32.559
CRR073312Silver flowering 11.550
CRR073313Silver flowering 21.589
CRR073314Silver flowering 31.023
CRR073315Gold flowering 14.927
CRR073316Gold flowering 25.168
CRR073317Gold flowering 32.897
CRR073318Tawny withering 15.349
CRR073319Tawny withering 23.178
CRR073320Tawny withering 34.609