Detail information of GWHGAAZE028539


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002316992.29.94187E-69hypothetical protein POPTR_0011s14030g [Populus trichocarpa]
Swissprottr|Q9SFC7|FB135_ARATH8E-29F-box protein At3g07870
trEMBLtr|B9I0D0|B9I0D0_POPTR4E-69Uncharacterized protein {ECO:0000313|EMBL:EEE97604.2}
TAIR10AT3G07870.13E-26F-box and associated interaction domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene5942177059422984-
GWHAAZE00000008mRNA5942177059422984-
GWHAAZE00000008exon5942177059422984-
GWHAAZE00000008CDS5942177059422984-
Transcript Sequence

Network for GWHGAAZE028539

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box48823.40E-08
PF07734.14FBA_12453609.80E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.428
SRR3591706second leaf1.900
SRR3591707mature leaf1.792
SRR3591708Shoot apex2.771
SRR3591709Stem1.897
SRR3591710White floral bud2.323
SRR3591711White flower2.643
SRR3591712Green floral bud1.902
SRR3591713Yellow flower1.526
SRP173429 SRR8316895Juvenile bud stage 7.764
SRR8316896Juvenile bud stage 7.225
SRR8316897Juvenile bud stage 2.864
SRR8316894Third green stage 3.470
SRR8316900Third green stage 7.953
SRR8316901Third green stage 7.073
SRR8316898Complete white stage 2.769
SRR8316899Complete white stage 8.628
SRR8316903Complete white stage 11.372
SRR8316902Silver flowering stage4.855
SRR8316904Silver flowering stage6.299
SRR8316905Silver flowering stage0.909
SRR8316906Gold flowering stage 3.088
SRR8316907Gold flowering stage 1.763
SRR8316908Gold flowering stage 1.554
SRP132670SRR6706286Control8.034
SRR6706287Light intensity 50%6.230
SRR6706288Light intensity 20%5.869
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.354
CNS0095593Slightly white alabastrum(diploid) 25.349
CNS0095594Slightly white alabastrum(diploid) 33.273
CNS0095595Whole white alabastrum(diploid) 24.782
CNS0095596Whole white alabastrum(diploid) 33.546
CNS0095597Whole white alabastrum(diploid) 44.237
CNS0095598Silvery flower (diploied) 17.627
CNS0095599Silvery flower (diploied) 26.915
CNS0095600Silvery flower (diploied) 311.673
CNS0095601Golden flower (diploid) 13.643
CNS0095602Golden flower (diploid) 27.701
CNS0095603Golden flower (diploid) 37.202
CNS0095604Slightly white alabastrum(tetraploid) 14.526
CNS0095605Slightly white alabastrum(tetraploid) 22.712
CNS0095606Slightly white alabastrum(tetraploid) 37.177
CNS0095607Whole white alabastrum(tetraploid) 11.962
CNS0095608Whole white alabastrum(tetraploid) 21.475
CNS0095609Whole white alabastrum(tetraploid) 35.592
CNS0095610Silvery flower (tetraploid) 15.090
CNS0095611Silvery flower (tetraploid) 24.812
CNS0095612Silvery flower (tetraploid) 34.320
CNS0095613Golden flower (tetraploid) 11.139
CNS0095614Golden flower (tetraploid) 22.822
CNS0095615Golden flower (tetraploid) 30.806
CRA001975CRR073297Stem 16.299
CRR073298Stem 25.901
CRR073299Stem 35.832
CRR073300Leaf 15.998
CRR073301Leaf 26.249
CRR073302Leaf 33.400
CRR073303Juvenile bud 14.043
CRR073304Juvenile bud 23.426
CRR073305Juvenile bud 34.713
CRR073306Third green 11.846
CRR073307Third green 21.970
CRR073308Third green 32.554
CRR073309Second white 11.529
CRR073310Second white 21.817
CRR073311Second white 31.413
CRR073312Silver flowering 10.468
CRR073313Silver flowering 20.923
CRR073314Silver flowering 30.843
CRR073315Gold flowering 13.415
CRR073316Gold flowering 26.624
CRR073317Gold flowering 32.982
CRR073318Tawny withering 12.930
CRR073319Tawny withering 21.342
CRR073320Tawny withering 32.468