Gene detail

Detail information of GWHGAAZE028549

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002311086.1	0	ribophorin 1 family protein [Populus trichocarpa]
Swissprot	tr\|Q9ZUA0\|OST1B_ARATH	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B (Precursor)
trEMBL	tr\|B9HLK4\|B9HLK4_POPTR	0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 {ECO:0000256\|RuleBase:RU361143}
TAIR10	AT2G01720.1	6E-177	Ribophorin I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	59561507	59574194	+
GWHAAZE00000008	mRNA	59561507	59574194	+
GWHAAZE00000008	exon	59561507	59561635	+
GWHAAZE00000008	exon	59562714	59562758	+
GWHAAZE00000008	exon	59563837	59564468	+
GWHAAZE00000008	exon	59565649	59565796	+
GWHAAZE00000008	exon	59571680	59571859	+
GWHAAZE00000008	exon	59572896	59572985	+
GWHAAZE00000008	exon	59573968	59574194	+
GWHAAZE00000008	CDS	59561507	59561635	+
GWHAAZE00000008	CDS	59562714	59562758	+
GWHAAZE00000008	CDS	59563837	59564468	+
GWHAAZE00000008	CDS	59565649	59565796	+
GWHAAZE00000008	CDS	59571680	59571859	+
GWHAAZE00000008	CDS	59572896	59572985	+
GWHAAZE00000008	CDS	59573968	59574090	+
GWHAAZE00000008	three_prime_UTR	59574091	59574194	+

Transcript Sequence
>GWHTAAZE028583 ATGGAAGCTCTGTGGAGACAGAGAGAAACCCTAGTTTGCTTTGTTTTGATCCCTCTTTTGCTGTTAGTCTCCAGATCCTCCGCTCTGTCTTCTTCATCAGAGCTTCAGATCGTCAACGCTGAACGCCGAATTGACTTGACTTCACACATAGTTCGTGTTTACCTGACATTGAAGGTCGAAAATACAGGGGAATCTCCTGCTTCAGAAGTCCTTCTTGCTTTTCCACCGGCGCAAGTCAATCATTTGGCAGTGCTCAAAGCAGCGACAACTGTTGGAAAAAAGAAGAAGAAATCTCATCTGCCACTTGATGTTAACCAAATTGACCTACCTGATGCTCCAAATGGAACCAAATATTTTTCCATATCATTGGTCAAACCATTGACCACGGGTGAATCTCTCACTCTAGAAGTATTTTACGTATTGACACGCTCTTTGGAACCTTTCCCAGTGGAGATAAGCCAGTCGGATTCTCAATTGGTCTATTATCATGATAGTGCTTTAATATTGTCGCCGTATCATATTAAACGACAGACAACATTTTTTAAGACACCAAGTACCAGGGTCGAGTCATTTACAACAGTGGAGCCCACTGCCCGTGCGGGTACAGAACTCAAGTATGGGCCCTATGAGGATCGCCATCCTTATTCCTTTTCTCCCATAATTGTTCATTTTGAGAATAACAATCCATTTGCTATTGTGGAGGAACTTGTGCGTGAAGTCGAAATTTCTCACTGGGGCAGCATTCAGATCACAGAGAGCTACAAGTTGGTTCACGCTGGGGCTCGACATAAAGGCGTTTTTTCAAGGGTTGATTATCAATCTAGGCCATCTTTTAGTGGTGTCTCTTCGTTCAAGAATCTTATTGCAAAACTACCTCCTAGGGTTCACTCTGTCTACTATCGGGATGGAATCGGAAACATCTCATCATCACATCTACGCACAGACTCTAGAAAGTCAGAACTGGAGATAGAGCCAAGGTATCCTTTATTTGGGGGGTGGAAAGCGACATTTATCATTGGGTATGGGCTACCATTGCAAGACTTCCTTTTTGAGTCACCTGATGGTAAACGTTACCTCAACTTCACTTTTGGATGTCCTCTTGGTGAGACTGTTGTTGACAAGTTGACCATCAAGACCAAATATTCATACCTTGATATCCTTGGAAGGAAGGTGGTGGTTTTGGAAAAGAACAATGTAGTTCCTGAGCACAACTCCCCTTTCCAGGTTTACTACAACTTCCATCCACTGTTCATGCTTGCGGAGCCATTGATGTTGACATCTGTATTTTTCTTATTGTTCATTTCTTGCGTTGCGTATCTCCACATGGACATTTCAATACGCAAGTGAGACAATAACATTTCCTCAGGGATTGGATTTTCAAACCTTTACACAACAGTGGTTTTGCGCATCCACACAGGAACTTTTCATCTTTGCCTGTAGAGCAGAAGTAG

Network for GWHGAAZE028549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04597.15	Ribophorin_I	36	439	3.30E-123

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12666	OST1, RPN1	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513
		Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006486	biological_process	protein glycosylation
GO:0005783	cellular_component	endoplasmic reticulum
GO:0016021	cellular_component	integral component of membrane
GO:0004579	molecular_function	dolichyl-diphosphooligosaccharide-protein glycotransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.148
	SRR3591706	second leaf	41.599
	SRR3591707	mature leaf	33.409
	SRR3591708	Shoot apex	76.493
	SRR3591709	Stem	66.765
	SRR3591710	White floral bud	74.630
	SRR3591711	White flower	94.514
	SRR3591712	Green floral bud	78.077
	SRR3591713	Yellow flower	58.461
SRP173429	SRR8316895	Juvenile bud stage	52.074
	SRR8316896	Juvenile bud stage	82.786
	SRR8316897	Juvenile bud stage	37.114
	SRR8316894	Third green stage	28.589
	SRR8316900	Third green stage	74.344
	SRR8316901	Third green stage	77.814
	SRR8316898	Complete white stage	30.774
	SRR8316899	Complete white stage	97.952
	SRR8316903	Complete white stage	44.611
	SRR8316902	Silver flowering stage	31.641
	SRR8316904	Silver flowering stage	38.670
	SRR8316905	Silver flowering stage	15.573
	SRR8316906	Gold flowering stage	56.685
	SRR8316907	Gold flowering stage	48.879
	SRR8316908	Gold flowering stage	58.094
SRP132670	SRR6706286	Control	54.218
	SRR6706287	Light intensity 50%	57.619
	SRR6706288	Light intensity 20%	58.473
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	82.092
	CNS0095593	Slightly white alabastrum(diploid) 2	65.998
	CNS0095594	Slightly white alabastrum(diploid) 3	70.247
	CNS0095595	Whole white alabastrum(diploid) 2	50.419
	CNS0095596	Whole white alabastrum(diploid) 3	57.407
	CNS0095597	Whole white alabastrum(diploid) 4	44.175
	CNS0095598	Silvery flower (diploied) 1	42.306
	CNS0095599	Silvery flower (diploied) 2	44.950
	CNS0095600	Silvery flower (diploied) 3	65.665
	CNS0095601	Golden flower (diploid) 1	31.947
	CNS0095602	Golden flower (diploid) 2	64.424
	CNS0095603	Golden flower (diploid) 3	60.688
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.950
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.774
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.868
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.119
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.971
	CNS0095610	Silvery flower (tetraploid) 1	62.844
	CNS0095611	Silvery flower (tetraploid) 2	53.717
	CNS0095612	Silvery flower (tetraploid) 3	47.153
	CNS0095613	Golden flower (tetraploid) 1	22.105
	CNS0095614	Golden flower (tetraploid) 2	49.556
	CNS0095615	Golden flower (tetraploid) 3	22.753
CRA001975	CRR073297	Stem 1	57.479
	CRR073298	Stem 2	51.605
	CRR073299	Stem 3	61.801
	CRR073300	Leaf 1	53.293
	CRR073301	Leaf 2	50.019
	CRR073302	Leaf 3	60.981
	CRR073303	Juvenile bud 1	46.863
	CRR073304	Juvenile bud 2	48.468
	CRR073305	Juvenile bud 3	49.332
	CRR073306	Third green 1	17.475
	CRR073307	Third green 2	18.927
	CRR073308	Third green 3	19.554
	CRR073309	Second white 1	19.900
	CRR073310	Second white 2	17.701
	CRR073311	Second white 3	13.768
	CRR073312	Silver flowering 1	8.264
	CRR073313	Silver flowering 2	10.168
	CRR073314	Silver flowering 3	9.908
	CRR073315	Gold flowering 1	35.789
	CRR073316	Gold flowering 2	44.195
	CRR073317	Gold flowering 3	37.463
	CRR073318	Tawny withering 1	56.685
	CRR073319	Tawny withering 2	56.152
	CRR073320	Tawny withering 3	59.553