Gene detail

Detail information of GWHGAAZE028565

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008807874.1	1.87514E-95	PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 35B-like [Phoenix dactylifera]
Swissprot	tr\|F4I0P8\|VP35B_ARATH	5E-87	Vacuolar protein sorting-associated protein 35B
trEMBL	tr\|M1CV56\|M1CV56_SOLTU	1E-97	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400075421}
TAIR10	AT1G75850.1	1E-74	VPS35 homolog B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	59983463	59984670	-
GWHAAZE00000008	mRNA	59983463	59984670	-
GWHAAZE00000008	exon	59983463	59983644	-
GWHAAZE00000008	exon	59983828	59983898	-
GWHAAZE00000008	exon	59984072	59984187	-
GWHAAZE00000008	exon	59984263	59984370	-
GWHAAZE00000008	exon	59984476	59984556	-
GWHAAZE00000008	exon	59984653	59984670	-
GWHAAZE00000008	CDS	59984653	59984670	-
GWHAAZE00000008	CDS	59984476	59984556	-
GWHAAZE00000008	CDS	59984263	59984370	-
GWHAAZE00000008	CDS	59984072	59984187	-
GWHAAZE00000008	CDS	59983828	59983898	-
GWHAAZE00000008	CDS	59983463	59983644	-

Transcript Sequence
>GWHTAAZE028599 ATGATTTTGAGAGAAAGAGCTGCCAATGACTGCAATATTGAAGCAGTGGCTTATGAGTTTTTCACTCAACCGTTTATGTTATATGAGGAAGAAGTAGCGGACTCTAAAGCCCAGGTGACTGCAATATACCTAATAATTGGGACTCTTCAGAGGATGCATATATTTGGTGCGGAGAATAGGTATACCTTAACACACAAAGCCATAGGGTACTCAGCAAAACTTTTAAAGAAGCCAGACCAATGCAGAGCTGTTTATGTGTGTTCGCATCTGTTTTGGGTTGACGATAAGGATGGAATCAAGGATGGAGAAAGCTGTGATACCTCGGTCCTCCTTTGCCTGAAGCGTTCATTAAGGATAGCAAATGCTGTGCAACAGATGGCCATTGTTACACGGGGAATTCCACAGATAACAAGTGCTGCAATTCAAGGCCTTGTAGAATTAATAAAAAGCAAGATGCAAAGTGACACGAACACCCAAGACTCACCTTCAGATGCTTTCTTTGCTAGTACTCTACAGTATATTCAATTTCAGAAACAGAAAGGAGGTGCTATGGGTGAGAAATATGATCCCATCAAG

Network for GWHGAAZE028565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03635.18	Vps35	6	126	1.90E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18468	VPS35	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport
GO:0042147	biological_process	retrograde transport, endosome to Golgi
GO:0030906	cellular_component	retromer, cargo-selective complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.102
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	2.308
	SRR3591708	Shoot apex	0.198
	SRR3591709	Stem	1.322
	SRR3591710	White floral bud	0.867
	SRR3591711	White flower	0.068
	SRR3591712	Green floral bud	0.151
	SRR3591713	Yellow flower	0.684
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.033
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.013
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000