Gene detail

Detail information of GWHGAAZE028586

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP16153.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LDK9\|APBLA_ARATH	Beta-adaptin-like protein A
trEMBL	tr\|A0A068V8A3\|A0A068V8A3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_118 {ECO:0000313\|EMBL:CDP16153.1}
TAIR10	AT5G11490.1	adaptin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	60409392	60426329	-
GWHAAZE00000008	mRNA	60409392	60426329	-
GWHAAZE00000008	exon	60426196	60426329	-
GWHAAZE00000008	exon	60421761	60422361	-
GWHAAZE00000008	exon	60417778	60417902	-
GWHAAZE00000008	exon	60416503	60416701	-
GWHAAZE00000008	exon	60415380	60415608	-
GWHAAZE00000008	exon	60414866	60415032	-
GWHAAZE00000008	exon	60414272	60414481	-
GWHAAZE00000008	exon	60413173	60413283	-
GWHAAZE00000008	exon	60411130	60411567	-
GWHAAZE00000008	exon	60409392	60409682	-
GWHAAZE00000008	CDS	60426196	60426329	-
GWHAAZE00000008	CDS	60421761	60422361	-
GWHAAZE00000008	CDS	60417778	60417902	-
GWHAAZE00000008	CDS	60416503	60416701	-
GWHAAZE00000008	CDS	60415380	60415608	-
GWHAAZE00000008	CDS	60414866	60415032	-
GWHAAZE00000008	CDS	60414272	60414481	-
GWHAAZE00000008	CDS	60413173	60413283	-
GWHAAZE00000008	CDS	60411130	60411567	-
GWHAAZE00000008	CDS	60409392	60409682	-

Transcript Sequence
>GWHTAAZE028620 ATGGTTGTAGACGTGACCAGTGATGATGCCGGAGGAGATATCGGCTGTGATGATGCGAGTTTGGGAGTTGAGGAAAGCGATGATGGAGGCAAAGTGGAAGAAGTAGGTCGCCCGTTTTTCATTGGAGGACTAAGCGCACATTCACAGGGCCAGACTGAATTTGATAAAGATTCTAAAGCAGCTTCTTCTAAATCTAACCCTAACCCTAATTCTACCAGAAAAGGAGAAGTTTCTGAGCTGAAAATTCAGCTCCGACAGCTTGCTGGCAGCCGGGCTCCAGGGACTGATGATTCCAAGCGTGATCTATTCAAGAAGGTGATCTCTTACATGACTATCGGGATTGATGTATCGTCGGTCTTTAGTGAGATGGTGATGTGCTCGGCTACTTCGGACATTGTTCTCAAGAAAATGTGTTATTTATATGTTGGGAATTATGCCAGGTACAACCCTGATCTTGCACTTCTTACGATCAATTTCCTTCAGAGGGATTGTAAAGATGAGGATCCAATGATCCGAGGACTGGCATTGAGGAGTTTGTGTACGCTCCGTGTGCCGAATTTGGTGGAGTATTTAGTGGGTCCGTTGGGATTGGGGTTGAAAGATACGAGTAGTTATGTGAGGAAGGTTGCGGCCGTTGGGGTTCTGAAGTTGTATCATATATCTGCTTCAACTTGCGTGGATGCAGATTTTCCTGCAATGCTTAAGCATTTGATGCTTCATGACCGTGATGCTCAGGTGGTTGCAAACTGTTTATCTGCACTACAAGAGATCTGGAGCTTGGAAGCAAGTACATCTGAGGAAGCATCGAGGGAGAGAGAGGCCTTGCTTAGCAAGCCAGTTATATATTACTTTTTGAATAAGATCAAGGAATTCAGTGAATGGGCACAGTGTATTGTTCTTGAGTTGGTATCTAAATACGTTCCTGTAGATAGCAATGAGATATTTGACATCATGGATCTACTTGAAGATCGACTTCAACATGCAAACGGTGCTGTTGTCTTAGCAACCATTAAGCTGTTCCTACAATTGACATTGTCTATGGCTGATGTTCACCAGCAGGTGTACGAGCGTATAAAAGCCCCTCTACTTACCCAAGTGAGCTCGGGGTGTCCAGAGCAATCCTATGCAGTTTTAAGCCACCTGCATCTCTTGGTGATGCGTGCTCCAATTATATTTTCTTCAGATTACAAACACTTCTATTGCCAGTACAATGAACCGTTTTATGTTAAGAAATTGAAGCTCGAAATGTTAACCGCAGTGGCAAATGAAAGCAATACTTACGAAATAGTGACAGAACTATGTGAATATGCTGCAAATGTTGATATTCCCATGGCAAGGGAATCAATCCGGGCTGTTGGGAAAATAGCACTGCAGCAGTATGATGTAAATGCTATTGTTGATAGGTTGCTTCAATTTCTCGAGATGGAAAAGGACTATGTGACTGCTGAAACTCTCGTTCTTGTGAAAGATCTTCTTAGGAAATATCCGCAATGGAGTCAAGATTGCATTGCAGTTGTTGGGAATATCAGCAGCCAAAATGTTCAGGAACCTAAGGCCAAAGCTGCTCTTATTTGGATGTTAGGGGAGTATGCTCAGGATATGCAAGATGCTCCTTATATTTTGGAAAGTTTAATTGAGAATTGGGATGATGAAGATTCGGCCGAGGTTCGTTTACATCTTCTTACAGCTGTAATGAAATGTTTCTTAAGAAGACCACCAGAGACCCAGCAAGCCTTGGGAGCTGCATTGGCTGCTGGTCTTGCTGATTTCCATCGGCCTTCTTATATGTTCACCGATAAGGAACACAGAGGGCCATTTGCATTTTCAGAAGAGCTGGCAAATCTTTCCATCGGCACAGAATCCGGGGCTGAAAATATAATAGTTTCAGCACAAAGGGTTGAGGAAAATGACAAAGATCTTCTTCTTCTGGGTACTTCAGAGAAGGAAGAAATTAGGGTTCCTACTAATAACGTTTCTGCATACAGTGCTCCTACTTATGATACAGAGCTTTTATCGTTAAATGAAACATTACCGGCAAACTCTGCACAGGCTAGCTCGGCCCTTGACGATCTACTACTTGGTCTGGGGTTACCAACTGTCCCTGACCCTAACCCTACTCCTTCCCTCCCTCCTTTGAAGCTTAACGCCAAGGCTGTGCTTGAGCCGAGCACTTTTCAGCAGAAATGGCGCCAACTGCCAATATCTATATCGCAGGAGAGCTCTGTAAGCCCACAAGGAGTGGCAGCGTTGATAAATCCTCAAGCCCTTGTGCAGCATATGCAAGGCCATTCCGTTCACTTGATTGCTTCAGGCGGTCAAGCCCCGAATTTCAAGTTCTTCTTCTTTGCGCAAAATGCAGAGGATTCTTCGATTTTCCTCATAGAGTGTGTAATCAACTCATCCACTTGTAAAGCGCATTTAAAGATAAAAGCTGATGATCAAAGCTCATCTCAGTCTTTCTTGGCTCTGTTCGAATCGGCCTTGTCCAGTTTTAGTGTGTCTTAG

Network for GWHGAAZE028586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0177

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01602.21	Adaptin_N	92	577	7.60E-89
PF09066.11	B2-adapt-app_C	717	828	2.00E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0016192	biological_process	vesicle-mediated transport
GO:0015031	biological_process	protein transport
GO:0030131	cellular_component	clathrin adaptor complex
GO:0030117	cellular_component	membrane coat
GO:0030276	molecular_function	clathrin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.856
	SRR3591706	second leaf	20.232
	SRR3591707	mature leaf	14.972
	SRR3591708	Shoot apex	30.900
	SRR3591709	Stem	29.565
	SRR3591710	White floral bud	27.992
	SRR3591711	White flower	28.326
	SRR3591712	Green floral bud	25.554
	SRR3591713	Yellow flower	22.121
SRP173429	SRR8316895	Juvenile bud stage	16.487
	SRR8316896	Juvenile bud stage	23.918
	SRR8316897	Juvenile bud stage	12.170
	SRR8316894	Third green stage	11.059
	SRR8316900	Third green stage	28.398
	SRR8316901	Third green stage	26.279
	SRR8316898	Complete white stage	13.698
	SRR8316899	Complete white stage	36.095
	SRR8316903	Complete white stage	18.864
	SRR8316902	Silver flowering stage	10.027
	SRR8316904	Silver flowering stage	17.113
	SRR8316905	Silver flowering stage	6.864
	SRR8316906	Gold flowering stage	26.169
	SRR8316907	Gold flowering stage	22.157
	SRR8316908	Gold flowering stage	21.268
SRP132670	SRR6706286	Control	25.430
	SRR6706287	Light intensity 50%	25.642
	SRR6706288	Light intensity 20%	28.378
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.096
	CNS0095593	Slightly white alabastrum(diploid) 2	16.153
	CNS0095594	Slightly white alabastrum(diploid) 3	16.436
	CNS0095595	Whole white alabastrum(diploid) 2	16.154
	CNS0095596	Whole white alabastrum(diploid) 3	14.856
	CNS0095597	Whole white alabastrum(diploid) 4	17.025
	CNS0095598	Silvery flower (diploied) 1	19.511
	CNS0095599	Silvery flower (diploied) 2	18.488
	CNS0095600	Silvery flower (diploied) 3	34.566
	CNS0095601	Golden flower (diploid) 1	17.803
	CNS0095602	Golden flower (diploid) 2	32.584
	CNS0095603	Golden flower (diploid) 3	31.597
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.871
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.560
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.374
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.470
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.080
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.449
	CNS0095610	Silvery flower (tetraploid) 1	26.793
	CNS0095611	Silvery flower (tetraploid) 2	35.407
	CNS0095612	Silvery flower (tetraploid) 3	27.163
	CNS0095613	Golden flower (tetraploid) 1	13.209
	CNS0095614	Golden flower (tetraploid) 2	23.539
	CNS0095615	Golden flower (tetraploid) 3	26.838
CRA001975	CRR073297	Stem 1	30.120
	CRR073298	Stem 2	32.134
	CRR073299	Stem 3	29.465
	CRR073300	Leaf 1	33.120
	CRR073301	Leaf 2	30.839
	CRR073302	Leaf 3	25.983
	CRR073303	Juvenile bud 1	28.072
	CRR073304	Juvenile bud 2	23.048
	CRR073305	Juvenile bud 3	44.845
	CRR073306	Third green 1	19.281
	CRR073307	Third green 2	16.499
	CRR073308	Third green 3	19.994
	CRR073309	Second white 1	18.078
	CRR073310	Second white 2	15.212
	CRR073311	Second white 3	17.770
	CRR073312	Silver flowering 1	16.050
	CRR073313	Silver flowering 2	17.944
	CRR073314	Silver flowering 3	14.047
	CRR073315	Gold flowering 1	16.831
	CRR073316	Gold flowering 2	21.498
	CRR073317	Gold flowering 3	18.452
	CRR073318	Tawny withering 1	28.120
	CRR073319	Tawny withering 2	20.526
	CRR073320	Tawny withering 3	26.385