Detail information of GWHGAAZE028614


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011019743.10PREDICTED: transcriptional corepressor LEUNIG isoform X2 [Populus euphratica]
COGYP_001865069.16E-29hypothetical protein Npun_F1419
Swissprottr|Q9FUY2|LEUNG_ARATH0Transcriptional corepressor LEUNIG
trEMBLtr|A0A022Q412|A0A022Q412_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU21923.1}
TAIR10AT4G32551.13E-165LisH dimerisation motif;WD40/YVTN repeat-like-containing domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene6115684561172965-
GWHAAZE00000008mRNA6115684561172965-
GWHAAZE00000008exon6117293461172965-
GWHAAZE00000008exon6117181761171914-
GWHAAZE00000008exon6117157961171688-
GWHAAZE00000008exon6117021061170305-
GWHAAZE00000008exon6116959461169679-
GWHAAZE00000008exon6116617961166257-
GWHAAZE00000008exon6116584161165916-
GWHAAZE00000008exon6116570261165751-
GWHAAZE00000008exon6116441161164769-
GWHAAZE00000008exon6116210261162393-
GWHAAZE00000008exon6116159261161736-
GWHAAZE00000008exon6116068061160789-
GWHAAZE00000008exon6116045361160602-
GWHAAZE00000008exon6115986461160019-
GWHAAZE00000008exon6115901661159132-
GWHAAZE00000008exon6115869061158900-
GWHAAZE00000008exon6115801961158095-
GWHAAZE00000008exon6115684561156988-
GWHAAZE00000008CDS6117293461172965-
GWHAAZE00000008CDS6117181761171914-
GWHAAZE00000008CDS6117157961171688-
GWHAAZE00000008CDS6117021061170305-
GWHAAZE00000008CDS6116959461169679-
GWHAAZE00000008CDS6116617961166257-
GWHAAZE00000008CDS6116584161165916-
GWHAAZE00000008CDS6116570261165751-
GWHAAZE00000008CDS6116441161164769-
GWHAAZE00000008CDS6116210261162393-
GWHAAZE00000008CDS6116159261161736-
GWHAAZE00000008CDS6116068061160789-
GWHAAZE00000008CDS6116045361160602-
GWHAAZE00000008CDS6115986461160019-
GWHAAZE00000008CDS6115901661159132-
GWHAAZE00000008CDS6115869061158900-
GWHAAZE00000008CDS6115801961158095-
GWHAAZE00000008CDS6115684561156988-
Transcript Sequence

Network for GWHGAAZE028614

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08513.12LisH10361.20E-06
PF00400.33WD404845150.0008
PF00400.33WD405235588.90E-06
PF00400.33WD405656023.00E-05
PF00400.33WD406486816.50E-05
PF00400.33WD407587950.024
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLUG
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf76.448
SRR3591706second leaf46.182
SRR3591707mature leaf47.494
SRR3591708Shoot apex67.540
SRR3591709Stem89.982
SRR3591710White floral bud55.518
SRR3591711White flower65.967
SRR3591712Green floral bud47.180
SRR3591713Yellow flower53.119
SRP173429 SRR8316895Juvenile bud stage 31.677
SRR8316896Juvenile bud stage 43.928
SRR8316897Juvenile bud stage 19.375
SRR8316894Third green stage 17.367
SRR8316900Third green stage 38.602
SRR8316901Third green stage 36.628
SRR8316898Complete white stage 12.148
SRR8316899Complete white stage 46.955
SRR8316903Complete white stage 30.272
SRR8316902Silver flowering stage21.643
SRR8316904Silver flowering stage32.795
SRR8316905Silver flowering stage16.585
SRR8316906Gold flowering stage 60.476
SRR8316907Gold flowering stage 59.684
SRR8316908Gold flowering stage 64.431
SRP132670SRR6706286Control44.653
SRR6706287Light intensity 50%42.272
SRR6706288Light intensity 20%43.304
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.596
CNS0095593Slightly white alabastrum(diploid) 226.758
CNS0095594Slightly white alabastrum(diploid) 324.311
CNS0095595Whole white alabastrum(diploid) 223.891
CNS0095596Whole white alabastrum(diploid) 319.814
CNS0095597Whole white alabastrum(diploid) 421.785
CNS0095598Silvery flower (diploied) 146.794
CNS0095599Silvery flower (diploied) 237.287
CNS0095600Silvery flower (diploied) 340.972
CNS0095601Golden flower (diploid) 145.627
CNS0095602Golden flower (diploid) 256.126
CNS0095603Golden flower (diploid) 355.791
CNS0095604Slightly white alabastrum(tetraploid) 134.480
CNS0095605Slightly white alabastrum(tetraploid) 228.363
CNS0095606Slightly white alabastrum(tetraploid) 360.626
CNS0095607Whole white alabastrum(tetraploid) 125.323
CNS0095608Whole white alabastrum(tetraploid) 218.206
CNS0095609Whole white alabastrum(tetraploid) 339.022
CNS0095610Silvery flower (tetraploid) 151.972
CNS0095611Silvery flower (tetraploid) 251.776
CNS0095612Silvery flower (tetraploid) 373.853
CNS0095613Golden flower (tetraploid) 135.054
CNS0095614Golden flower (tetraploid) 246.902
CNS0095615Golden flower (tetraploid) 336.472
CRA001975CRR073297Stem 154.794
CRR073298Stem 251.277
CRR073299Stem 345.613
CRR073300Leaf 156.466
CRR073301Leaf 254.710
CRR073302Leaf 338.130
CRR073303Juvenile bud 141.207
CRR073304Juvenile bud 230.628
CRR073305Juvenile bud 356.653
CRR073306Third green 124.737
CRR073307Third green 219.149
CRR073308Third green 328.037
CRR073309Second white 127.053
CRR073310Second white 242.498
CRR073311Second white 349.538
CRR073312Silver flowering 149.548
CRR073313Silver flowering 249.105
CRR073314Silver flowering 346.912
CRR073315Gold flowering 126.945
CRR073316Gold flowering 243.117
CRR073317Gold flowering 328.380
CRR073318Tawny withering 152.452
CRR073319Tawny withering 250.305
CRR073320Tawny withering 355.466