Gene detail

Detail information of GWHGAAZE028630

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU29235.1	6.3298E-161	hypothetical protein MIMGU_mgv1a013409mg [Erythranthe guttata]
COG	YP_007376943.1	3E-14	small GTP-binding protein domain-containing protein, Ras family
Swissprot	tr\|Q8H156\|RAN3_ARATH	2E-162	GTP-binding nuclear protein Ran-3
trEMBL	tr\|A0A022QRU2\|A0A022QRU2_ERYGU	2E-161	Uncharacterized protein {ECO:0000313\|EMBL:EYU29235.1}
TAIR10	AT5G55190.1	1E-127	RAN GTPase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	62042056	62045184	+
GWHAAZE00000008	mRNA	62042056	62045184	+
GWHAAZE00000008	exon	62042056	62042058	+
GWHAAZE00000008	exon	62042190	62042259	+
GWHAAZE00000008	exon	62043126	62043182	+
GWHAAZE00000008	exon	62043294	62043411	+
GWHAAZE00000008	exon	62044192	62044281	+
GWHAAZE00000008	exon	62044382	62044561	+
GWHAAZE00000008	exon	62044651	62044728	+
GWHAAZE00000008	exon	62045115	62045184	+
GWHAAZE00000008	CDS	62042056	62042058	+
GWHAAZE00000008	CDS	62042190	62042259	+
GWHAAZE00000008	CDS	62043126	62043182	+
GWHAAZE00000008	CDS	62043294	62043411	+
GWHAAZE00000008	CDS	62044192	62044281	+
GWHAAZE00000008	CDS	62044382	62044561	+
GWHAAZE00000008	CDS	62044651	62044728	+
GWHAAZE00000008	CDS	62045115	62045184	+

Transcript Sequence
>GWHTAAZE028664 ATGGCTTTGCCGAATCAGCAGACGGTTGAGTATCCAAGCTTCAAGCTTGTAATTGTTGGCGATGGTGGAACAGGAAAAACCACATTTGTGAAGAGGCATCTAACAGGAGAATTTGAGAAGAAATATGAGCCAACCATCGGTGTGGAGGTTCATCCATTGGATTTCTTCACAAATTGCGGTAAAATTAGGTTTTACTGCTGGGACACAGCTGGTCAGGAGAAATTTGGCGGCCTTAGGGATGGATACTACATTCATGGACAATGTGCCATCATCATGTTTGACGTTACTGCCAGGTTGACCTACAAGAACGTTCCAACGTGGCATCGTGATCTTTGCCGGGTTTGTGAGAACATCCCAATTGTGCTTTGTGGGAATAAGGTTGATGTAAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTACAGTACTATGAGATATCAGCGAAGAGCAATTACAACTTTGAAAAGCCTTTCCTCTATCTTGCTAGAAAGCTTGCAGGTGATGCTAACTTACATTTTGTGGAGTCTCCTGCCCTTGCTCCTCCAGAGGTGCTCATTGACATGGCTGCACAGCAACTACATGAGCAGGAGCTTGCTATAGCTGCTAATCAGCCCCTTCCTGATGACGACGATGATACCTTTGAATAG

Network for GWHGAAZE028630

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	15	171	5.20E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07936	RAN	RNA transport	map03013
K07936	RAN	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0006913	biological_process	nucleocytoplasmic transport
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	552.061
	SRR3591706	second leaf	161.585
	SRR3591707	mature leaf	95.625
	SRR3591708	Shoot apex	401.250
	SRR3591709	Stem	305.589
	SRR3591710	White floral bud	273.590
	SRR3591711	White flower	430.488
	SRR3591712	Green floral bud	333.677
	SRR3591713	Yellow flower	235.958
SRP173429	SRR8316895	Juvenile bud stage	229.480
	SRR8316896	Juvenile bud stage	271.439
	SRR8316897	Juvenile bud stage	166.313
	SRR8316894	Third green stage	99.678
	SRR8316900	Third green stage	380.106
	SRR8316901	Third green stage	359.467
	SRR8316898	Complete white stage	133.508
	SRR8316899	Complete white stage	482.200
	SRR8316903	Complete white stage	200.199
	SRR8316902	Silver flowering stage	260.480
	SRR8316904	Silver flowering stage	212.367
	SRR8316905	Silver flowering stage	78.059
	SRR8316906	Gold flowering stage	246.736
	SRR8316907	Gold flowering stage	257.699
	SRR8316908	Gold flowering stage	264.630
SRP132670	SRR6706286	Control	303.721
	SRR6706287	Light intensity 50%	350.068
	SRR6706288	Light intensity 20%	403.564
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	278.583
	CNS0095593	Slightly white alabastrum(diploid) 2	347.502
	CNS0095594	Slightly white alabastrum(diploid) 3	279.125
	CNS0095595	Whole white alabastrum(diploid) 2	286.803
	CNS0095596	Whole white alabastrum(diploid) 3	299.727
	CNS0095597	Whole white alabastrum(diploid) 4	216.523
	CNS0095598	Silvery flower (diploied) 1	208.286
	CNS0095599	Silvery flower (diploied) 2	231.397
	CNS0095600	Silvery flower (diploied) 3	275.636
	CNS0095601	Golden flower (diploid) 1	162.731
	CNS0095602	Golden flower (diploid) 2	206.928
	CNS0095603	Golden flower (diploid) 3	209.284
	CNS0095604	Slightly white alabastrum(tetraploid) 1	331.350
	CNS0095605	Slightly white alabastrum(tetraploid) 2	282.549
	CNS0095606	Slightly white alabastrum(tetraploid) 3	563.369
	CNS0095607	Whole white alabastrum(tetraploid) 1	181.129
	CNS0095608	Whole white alabastrum(tetraploid) 2	180.669
	CNS0095609	Whole white alabastrum(tetraploid) 3	373.664
	CNS0095610	Silvery flower (tetraploid) 1	310.617
	CNS0095611	Silvery flower (tetraploid) 2	243.539
	CNS0095612	Silvery flower (tetraploid) 3	206.995
	CNS0095613	Golden flower (tetraploid) 1	112.257
	CNS0095614	Golden flower (tetraploid) 2	155.369
	CNS0095615	Golden flower (tetraploid) 3	139.095
CRA001975	CRR073297	Stem 1	398.741
	CRR073298	Stem 2	379.042
	CRR073299	Stem 3	461.716
	CRR073300	Leaf 1	476.376
	CRR073301	Leaf 2	498.680
	CRR073302	Leaf 3	713.111
	CRR073303	Juvenile bud 1	716.948
	CRR073304	Juvenile bud 2	516.384
	CRR073305	Juvenile bud 3	581.878
	CRR073306	Third green 1	271.576
	CRR073307	Third green 2	354.712
	CRR073308	Third green 3	300.828
	CRR073309	Second white 1	246.057
	CRR073310	Second white 2	199.138
	CRR073311	Second white 3	127.362
	CRR073312	Silver flowering 1	148.769
	CRR073313	Silver flowering 2	167.938
	CRR073314	Silver flowering 3	138.777
	CRR073315	Gold flowering 1	322.708
	CRR073316	Gold flowering 2	385.956
	CRR073317	Gold flowering 3	250.687
	CRR073318	Tawny withering 1	550.473
	CRR073319	Tawny withering 2	448.158
	CRR073320	Tawny withering 3	639.976