Detail information of GWHGAAZE028638


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010273624.14.4764E-109PREDICTED: 50S ribosomal protein L9, chloroplastic [Nelumbo nucifera]
COGYP_003197962.13E-1350S ribosomal protein L9
trEMBLtr|A0A068V096|A0A068V096_COFCA1E-103Coffea canephora DH200=94 genomic scaffold, scaffold_79 {ECO:0000313|EMBL:CDP14086.1}
TAIR10AT5G53070.11E-64Ribosomal protein L9/RNase H1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene6231214562315218-
GWHAAZE00000008mRNA6231214562315218-
GWHAAZE00000008exon6231506062315218-
GWHAAZE00000008exon6231476062314933-
GWHAAZE00000008exon6231440762314541-
GWHAAZE00000008exon6231344362313550-
GWHAAZE00000008exon6231265062312721-
GWHAAZE00000008exon6231214562312309-
GWHAAZE00000008five_prime_UTR6231506062315218-
GWHAAZE00000008five_prime_UTR6231491662314933-
GWHAAZE00000008CDS6231476062314915-
GWHAAZE00000008CDS6231440762314541-
GWHAAZE00000008CDS6231344362313550-
GWHAAZE00000008CDS6231265062312721-
GWHAAZE00000008CDS6231214562312309-
Transcript Sequence

Network for GWHGAAZE028638

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01281.20Ribosomal_L9_N47836.90E-12
PF03948.15Ribosomal_L9_C1201934.90E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02939RP-L9, MRPL9, rplI Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.734
SRR3591706second leaf6.699
SRR3591707mature leaf9.903
SRR3591708Shoot apex18.128
SRR3591709Stem10.277
SRR3591710White floral bud11.846
SRR3591711White flower26.236
SRR3591712Green floral bud21.535
SRR3591713Yellow flower19.783
SRP173429 SRR8316895Juvenile bud stage 17.695
SRR8316896Juvenile bud stage 26.446
SRR8316897Juvenile bud stage 14.018
SRR8316894Third green stage 10.699
SRR8316900Third green stage 25.768
SRR8316901Third green stage 26.261
SRR8316898Complete white stage 6.569
SRR8316899Complete white stage 21.926
SRR8316903Complete white stage 8.368
SRR8316902Silver flowering stage8.633
SRR8316904Silver flowering stage8.761
SRR8316905Silver flowering stage3.889
SRR8316906Gold flowering stage 21.499
SRR8316907Gold flowering stage 15.407
SRR8316908Gold flowering stage 21.072
SRP132670SRR6706286Control23.411
SRR6706287Light intensity 50%20.182
SRR6706288Light intensity 20%21.680
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.133
CNS0095593Slightly white alabastrum(diploid) 219.383
CNS0095594Slightly white alabastrum(diploid) 326.049
CNS0095595Whole white alabastrum(diploid) 218.994
CNS0095596Whole white alabastrum(diploid) 318.603
CNS0095597Whole white alabastrum(diploid) 411.980
CNS0095598Silvery flower (diploied) 119.394
CNS0095599Silvery flower (diploied) 217.482
CNS0095600Silvery flower (diploied) 312.735
CNS0095601Golden flower (diploid) 114.477
CNS0095602Golden flower (diploid) 215.473
CNS0095603Golden flower (diploid) 315.256
CNS0095604Slightly white alabastrum(tetraploid) 128.338
CNS0095605Slightly white alabastrum(tetraploid) 221.874
CNS0095606Slightly white alabastrum(tetraploid) 325.725
CNS0095607Whole white alabastrum(tetraploid) 110.692
CNS0095608Whole white alabastrum(tetraploid) 211.825
CNS0095609Whole white alabastrum(tetraploid) 321.757
CNS0095610Silvery flower (tetraploid) 115.937
CNS0095611Silvery flower (tetraploid) 219.787
CNS0095612Silvery flower (tetraploid) 311.690
CNS0095613Golden flower (tetraploid) 114.147
CNS0095614Golden flower (tetraploid) 217.396
CNS0095615Golden flower (tetraploid) 311.562
CRA001975CRR073297Stem 124.796
CRR073298Stem 223.669
CRR073299Stem 323.407
CRR073300Leaf 116.620
CRR073301Leaf 219.777
CRR073302Leaf 318.944
CRR073303Juvenile bud 119.506
CRR073304Juvenile bud 210.571
CRR073305Juvenile bud 315.009
CRR073306Third green 11.818
CRR073307Third green 22.558
CRR073308Third green 34.818
CRR073309Second white 17.336
CRR073310Second white 26.305
CRR073311Second white 34.847
CRR073312Silver flowering 12.794
CRR073313Silver flowering 22.399
CRR073314Silver flowering 33.349
CRR073315Gold flowering 112.237
CRR073316Gold flowering 215.096
CRR073317Gold flowering 36.483
CRR073318Tawny withering 114.209
CRR073319Tawny withering 217.224
CRR073320Tawny withering 314.499