Gene detail

Detail information of GWHGAAZE028648

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002324285.1	3.0126E-164	hypothetical protein POPTR_0018s01470g [Populus trichocarpa]
COG	YP_004468960.1	7E-28	putative phospholipase/carboxylesterase family protein
trEMBL	tr\|B9IKU8\|B9IKU8_POPTR	1E-164	Uncharacterized protein {ECO:0000313\|EMBL:EEF02850.1}
TAIR10	AT5G20060.3	4E-109	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	62464640	62470926	+
GWHAAZE00000008	mRNA	62464640	62470926	+
GWHAAZE00000008	exon	62464640	62464670	+
GWHAAZE00000008	exon	62464780	62464894	+
GWHAAZE00000008	exon	62466050	62466086	+
GWHAAZE00000008	exon	62466753	62466822	+
GWHAAZE00000008	exon	62467008	62467112	+
GWHAAZE00000008	exon	62468148	62468298	+
GWHAAZE00000008	exon	62468586	62468668	+
GWHAAZE00000008	exon	62470660	62470753	+
GWHAAZE00000008	exon	62470845	62470926	+
GWHAAZE00000008	CDS	62464640	62464670	+
GWHAAZE00000008	CDS	62464780	62464894	+
GWHAAZE00000008	CDS	62466050	62466086	+
GWHAAZE00000008	CDS	62466753	62466822	+
GWHAAZE00000008	CDS	62467008	62467112	+
GWHAAZE00000008	CDS	62468148	62468298	+
GWHAAZE00000008	CDS	62468586	62468668	+
GWHAAZE00000008	CDS	62470660	62470753	+
GWHAAZE00000008	CDS	62470845	62470926	+

Transcript Sequence
>GWHTAAZE028682 ATGAGCTTCAATAGCTCTAATGTGGGCTCTGGTAGTAGAAATACTAGTAGGGCATTTGAATTTGGAAGGACTTATGTGGTGAGGCCTAAAGGGACACACCAAGCTACTATAGTTTGGCTACATGGCCTTGGGGACAAAGGCTCAAGCTGGTCCCAGATCTTGGAAACTCTTCCTCTTCCAAATATCAAGTGGATTTGCCCAACCGCTCCTACTCGTCCAGTGGCTATATTTGGAGGCTTTCCTTGCACTGCTTGGTTTGATGCAAGAGATATATCAGAAGACACGCCTGATGATTTGGAAGGGTTAGATGCTGCAGCAGCACATGTTGCTAATCTCTTGTCAACAGAGCCTGCTGATATTAAGCTAGGTGTTGGTGGCTTCAGTATGGGTGCTGCAACTGCTATGTACTCCGCCACATGCCATGTTTTAGGGAAGTATGGGAACGGAAATCCGTACCCTGTAAATCTTACCACTATTGTCGGCCTCAGTGGTTGGCTTCCATGTTCAAGGACTTTGAGGAATCGCGTGGAAGGATCTCAAGAGGCTGCGAGGCGAGCCGCATCTTTGCCCATTTTGCTCTGTCATGGCCTAGGTGATGACGTGGTACCGTACAAACATGGAGAGAGATCCGCACAAACCTTAAGCTCTGCAGGATTTCGGAACCTAACTTTTAGATCGTATAACGGGCTCGGCCACTACACAATTCCCGAAGAGACCGATGAGGTCTGCAGCTGGCTCATTTCAAGGCTGGCGCTCAAAGGGTCATAA

Network for GWHGAAZE028648

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02230.17	Abhydrolase_2	25	243	8.50E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06130	LYPLA2	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.575
	SRR3591706	second leaf	4.624
	SRR3591707	mature leaf	3.787
	SRR3591708	Shoot apex	14.003
	SRR3591709	Stem	28.023
	SRR3591710	White floral bud	27.386
	SRR3591711	White flower	22.853
	SRR3591712	Green floral bud	33.234
	SRR3591713	Yellow flower	15.478
SRP173429	SRR8316895	Juvenile bud stage	14.702
	SRR8316896	Juvenile bud stage	19.875
	SRR8316897	Juvenile bud stage	12.656
	SRR8316894	Third green stage	8.791
	SRR8316900	Third green stage	34.266
	SRR8316901	Third green stage	30.273
	SRR8316898	Complete white stage	10.423
	SRR8316899	Complete white stage	29.532
	SRR8316903	Complete white stage	11.442
	SRR8316902	Silver flowering stage	9.442
	SRR8316904	Silver flowering stage	9.063
	SRR8316905	Silver flowering stage	2.453
	SRR8316906	Gold flowering stage	12.870
	SRR8316907	Gold flowering stage	12.117
	SRR8316908	Gold flowering stage	18.672
SRP132670	SRR6706286	Control	32.899
	SRR6706287	Light intensity 50%	32.364
	SRR6706288	Light intensity 20%	35.894
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.887
	CNS0095593	Slightly white alabastrum(diploid) 2	34.026
	CNS0095594	Slightly white alabastrum(diploid) 3	17.862
	CNS0095595	Whole white alabastrum(diploid) 2	27.099
	CNS0095596	Whole white alabastrum(diploid) 3	29.653
	CNS0095597	Whole white alabastrum(diploid) 4	25.251
	CNS0095598	Silvery flower (diploied) 1	18.650
	CNS0095599	Silvery flower (diploied) 2	16.260
	CNS0095600	Silvery flower (diploied) 3	13.496
	CNS0095601	Golden flower (diploid) 1	11.894
	CNS0095602	Golden flower (diploid) 2	11.102
	CNS0095603	Golden flower (diploid) 3	9.042
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.810
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.293
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.754
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.689
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.501
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.476
	CNS0095610	Silvery flower (tetraploid) 1	25.110
	CNS0095611	Silvery flower (tetraploid) 2	11.748
	CNS0095612	Silvery flower (tetraploid) 3	13.175
	CNS0095613	Golden flower (tetraploid) 1	5.661
	CNS0095614	Golden flower (tetraploid) 2	6.483
	CNS0095615	Golden flower (tetraploid) 3	1.647
CRA001975	CRR073297	Stem 1	15.260
	CRR073298	Stem 2	13.839
	CRR073299	Stem 3	11.185
	CRR073300	Leaf 1	21.674
	CRR073301	Leaf 2	32.130
	CRR073302	Leaf 3	31.149
	CRR073303	Juvenile bud 1	42.429
	CRR073304	Juvenile bud 2	26.234
	CRR073305	Juvenile bud 3	28.284
	CRR073306	Third green 1	5.709
	CRR073307	Third green 2	6.217
	CRR073308	Third green 3	8.928
	CRR073309	Second white 1	5.130
	CRR073310	Second white 2	3.675
	CRR073311	Second white 3	0.746
	CRR073312	Silver flowering 1	0.325
	CRR073313	Silver flowering 2	0.795
	CRR073314	Silver flowering 3	1.530
	CRR073315	Gold flowering 1	6.933
	CRR073316	Gold flowering 2	6.934
	CRR073317	Gold flowering 3	5.599
	CRR073318	Tawny withering 1	39.944
	CRR073319	Tawny withering 2	43.028
	CRR073320	Tawny withering 3	35.360