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Detail information of GWHGAAZE028667
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_010432793.1
4.73503E-53
PREDICTED: putative UPF0481 protein At3g02645 isoform X2 [Camelina sativa]
Swissprot
tr|Q9SD53|Y3720_ARATH
2E-22
UPF0481 protein At3g47200
trEMBL
tr|V7AUP2|V7AUP2_PHAVU
1E-40
Uncharacterized protein {ECO:0000313|EMBL:ESW09035.1}
TAIR10
AT4G31980.1
8E-28
Without detailed annotation
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000008
gene
63329865
63331169
-
GWHAAZE00000008
mRNA
63329865
63331169
-
GWHAAZE00000008
exon
63329865
63330175
-
GWHAAZE00000008
exon
63330497
63331169
-
GWHAAZE00000008
CDS
63330497
63331169
-
GWHAAZE00000008
CDS
63329865
63330175
-
Transcript Sequence
>GWHTAAZE028701 ATGGAAAGGAAAGGTGGAGTAGATGGAAGGGAAAATTATACTTCAACTTCCATTGATGCATTGGCAACTTCTATTAGAAATAAGATGGAAGAATTGCTCGAAATACCGCCCGAATGTTGCATCTATAGAGTTCCTCTTAAACACATGGTGTCAAACAAAGAGGTTTATACGCCTCATGTAGTTTCTATCGGCCCTTTTTACTGCAATAAAAAAGAACTACAAGGCATGGAAGAGCATAAATTGAGGTACACGAAGGTATTCCTTACTCGTACTAACAGAAATTTAGATGATTTTATATCAGTGATGATGGGGATGGAAAAGAGAGCACGAAATTCTTATTCCGAGAAAATTGATCTCAGTGTTAACGAATTTGTGAAAATACTAATCATGGATAGTTTTTTCATCCTCGAGGCCATGATTGGGGAGCTAGGTATTGATCCTCTTGACCAAGCTTTTTATCTTCCAAACCAGGTCTCTCACTTTAAAACAGATTTAGTTTTACTCGAAAATCAAATTCCATTCTTTGTTCTCAATAATTTATTCTTATCGGCCTTTCCTGGACGTCCACCAACGCTATTCCTTGATATTTATGTCAATTACATGGCTAGTAACATAATTCCAATCAAGGACTCGGGAAAATTGTTGAGGAAAGTTAGGGAGTACTTAAACTCAGTCGACATAGATAAAGATGCAGATTTACTTAGACAAAATGGTATTATTGAGGATTGGCTGGGTAAAAACTCGACTGTGGTGGATCTATTTAATAAAATTCGACGTGAAGCTTGGATTTATATTCCATCGTACTACCTTTACGATATATCTAAAAATTTGAATGCTTATTGCAATGTTACTCGGCATAAGTGGAAGGCAACCTTCAAATGCGATTACTGCAGCACGCTATGGATGATTGCTTCTACGACCACCGCTGTTATACTACTCACACTCGCTTTCTTATCTACCGTTGCTGCTTTCCTTGCACTTTAG
Network for GWHGAAZE028667
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
CFinderModule0055
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF03140.16
DUF247
41
191
1.90E-39
PF03140.16
DUF247
225
315
7.70E-20
Protein Sequence
>GWHPAAZE028685 MERKGGVDGRENYTSTSIDALATSIRNKMEELLEIPPECCIYRVPLKHMVSNKEVYTPHVVSIGPFYCNKKELQGMEEHKLRYTKVFLTRTNRNLDDFISVMMGMEKRARNSYSEKIDLSVNEFVKILIMDSFFILEAMIGELGIDPLDQAFYLPNQVSHFKTDLVLLENQIPFFVLNNLFLSAFPGRPPTLFLDIYVNYMASNIIPIKDSGKLLRKVREYLNSVDIDKDADLLRQNGIIEDWLGKNSTVVDLFNKIRREAWIYIPSYYLYDISKNLNAYCNVTRHKWKATFKCDYCSTLWMIASTTTAVILLTLAFLSTVAAFLAL
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
0.096
SRR3591706
second leaf
0.000
SRR3591707
mature leaf
0.000
SRR3591708
Shoot apex
0.000
SRR3591709
Stem
0.000
SRR3591710
White floral bud
0.000
SRR3591711
White flower
0.000
SRR3591712
Green floral bud
0.109
SRR3591713
Yellow flower
0.000
SRP173429
SRR8316895
Juvenile bud stage
0.077
SRR8316896
Juvenile bud stage
0.387
SRR8316897
Juvenile bud stage
0.150
SRR8316894
Third green stage
0.443
SRR8316900
Third green stage
0.316
SRR8316901
Third green stage
0.425
SRR8316898
Complete white stage
0.014
SRR8316899
Complete white stage
0.000
SRR8316903
Complete white stage
0.000
SRR8316902
Silver flowering stage
0.000
SRR8316904
Silver flowering stage
0.123
SRR8316905
Silver flowering stage
0.000
SRR8316906
Gold flowering stage
0.038
SRR8316907
Gold flowering stage
0.000
SRR8316908
Gold flowering stage
0.000
SRP132670
SRR6706286
Control
0.041
SRR6706287
Light intensity 50%
0.015
SRR6706288
Light intensity 20%
0.000
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
0.969
CNS0095593
Slightly white alabastrum(diploid) 2
0.487
CNS0095594
Slightly white alabastrum(diploid) 3
0.884
CNS0095595
Whole white alabastrum(diploid) 2
0.742
CNS0095596
Whole white alabastrum(diploid) 3
0.347
CNS0095597
Whole white alabastrum(diploid) 4
0.441
CNS0095598
Silvery flower (diploied) 1
0.000
CNS0095599
Silvery flower (diploied) 2
0.000
CNS0095600
Silvery flower (diploied) 3
0.000
CNS0095601
Golden flower (diploid) 1
0.000
CNS0095602
Golden flower (diploid) 2
0.000
CNS0095603
Golden flower (diploid) 3
0.000
CNS0095604
Slightly white alabastrum(tetraploid) 1
0.063
CNS0095605
Slightly white alabastrum(tetraploid) 2
0.125
CNS0095606
Slightly white alabastrum(tetraploid) 3
0.122
CNS0095607
Whole white alabastrum(tetraploid) 1
0.030
CNS0095608
Whole white alabastrum(tetraploid) 2
0.000
CNS0095609
Whole white alabastrum(tetraploid) 3
0.000
CNS0095610
Silvery flower (tetraploid) 1
0.000
CNS0095611
Silvery flower (tetraploid) 2
0.000
CNS0095612
Silvery flower (tetraploid) 3
0.000
CNS0095613
Golden flower (tetraploid) 1
0.000
CNS0095614
Golden flower (tetraploid) 2
0.000
CNS0095615
Golden flower (tetraploid) 3
0.000
CRA001975
CRR073297
Stem 1
0.070
CRR073298
Stem 2
0.000
CRR073299
Stem 3
0.000
CRR073300
Leaf 1
0.224
CRR073301
Leaf 2
0.044
CRR073302
Leaf 3
0.000
CRR073303
Juvenile bud 1
0.000
CRR073304
Juvenile bud 2
0.154
CRR073305
Juvenile bud 3
0.000
CRR073306
Third green 1
0.000
CRR073307
Third green 2
0.000
CRR073308
Third green 3
0.000
CRR073309
Second white 1
0.000
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.000
CRR073312
Silver flowering 1
0.000
CRR073313
Silver flowering 2
0.000
CRR073314
Silver flowering 3
0.000
CRR073315
Gold flowering 1
0.076
CRR073316
Gold flowering 2
0.053
CRR073317
Gold flowering 3
0.000
CRR073318
Tawny withering 1
0.000
CRR073319
Tawny withering 2
0.047
CRR073320
Tawny withering 3
0.000