Detail information of GWHGAAZE028764


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010648652.10PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Vitis vinifera]
COGYP_002489496.13E-17cellulose synthase
Swissprottr|O48946|CESA1_ARATH0Cellulose synthase A catalytic subunit 1 [UDP-forming]
trEMBLtr|F6H311|F6H311_VITVI0Cellulose synthase {ECO:0000256|RuleBase:RU361116}
TAIR10AT4G32410.10cellulose synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene6806876368079565-
GWHAAZE00000008mRNA6806876368079565-
GWHAAZE00000008exon6806876368069350-
GWHAAZE00000008exon6807016868070518-
GWHAAZE00000008exon6807177468071970-
GWHAAZE00000008exon6807256368072830-
GWHAAZE00000008exon6807349468073706-
GWHAAZE00000008exon6807401468074139-
GWHAAZE00000008exon6807424468074381-
GWHAAZE00000008exon6807467168075016-
GWHAAZE00000008exon6807584468076110-
GWHAAZE00000008exon6807676368076949-
GWHAAZE00000008exon6807708368077197-
GWHAAZE00000008exon6807788668078067-
GWHAAZE00000008exon6807816568078360-
GWHAAZE00000008exon6807948568079565-
GWHAAZE00000008CDS6807948568079565-
GWHAAZE00000008CDS6807816568078360-
GWHAAZE00000008CDS6807788668078067-
GWHAAZE00000008CDS6807708368077197-
GWHAAZE00000008CDS6807676368076949-
GWHAAZE00000008CDS6807584468076110-
GWHAAZE00000008CDS6807467168075016-
GWHAAZE00000008CDS6807424468074381-
GWHAAZE00000008CDS6807401468074139-
GWHAAZE00000008CDS6807349468073706-
GWHAAZE00000008CDS6807256368072830-
GWHAAZE00000008CDS6807177468071970-
GWHAAZE00000008CDS6807016868070518-
GWHAAZE00000008CDS6806876368069350-
Transcript Sequence

Network for GWHGAAZE028764

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14569.7zf-UDP291064.10E-44
PF03552.15Cellulose_synt35610740
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030244biological_processcellulose biosynthetic process
GO:0016020cellular_componentmembrane
GO:0016760molecular_functioncellulose synthase (UDP-forming) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf133.213
SRR3591706second leaf81.233
SRR3591707mature leaf40.063
SRR3591708Shoot apex58.981
SRR3591709Stem70.858
SRR3591710White floral bud45.624
SRR3591711White flower33.120
SRR3591712Green floral bud61.351
SRR3591713Yellow flower18.895
SRP173429 SRR8316895Juvenile bud stage 34.071
SRR8316896Juvenile bud stage 43.606
SRR8316897Juvenile bud stage 21.253
SRR8316894Third green stage 20.752
SRR8316900Third green stage 56.791
SRR8316901Third green stage 65.145
SRR8316898Complete white stage 28.278
SRR8316899Complete white stage 81.649
SRR8316903Complete white stage 44.105
SRR8316902Silver flowering stage23.676
SRR8316904Silver flowering stage31.240
SRR8316905Silver flowering stage13.930
SRR8316906Gold flowering stage 51.841
SRR8316907Gold flowering stage 48.725
SRR8316908Gold flowering stage 53.145
SRP132670SRR6706286Control62.766
SRR6706287Light intensity 50%76.941
SRR6706288Light intensity 20%85.596
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.324
CNS0095593Slightly white alabastrum(diploid) 229.076
CNS0095594Slightly white alabastrum(diploid) 322.030
CNS0095595Whole white alabastrum(diploid) 226.638
CNS0095596Whole white alabastrum(diploid) 325.176
CNS0095597Whole white alabastrum(diploid) 424.617
CNS0095598Silvery flower (diploied) 127.692
CNS0095599Silvery flower (diploied) 224.379
CNS0095600Silvery flower (diploied) 343.683
CNS0095601Golden flower (diploid) 122.498
CNS0095602Golden flower (diploid) 245.258
CNS0095603Golden flower (diploid) 343.854
CNS0095604Slightly white alabastrum(tetraploid) 133.345
CNS0095605Slightly white alabastrum(tetraploid) 224.686
CNS0095606Slightly white alabastrum(tetraploid) 383.302
CNS0095607Whole white alabastrum(tetraploid) 120.527
CNS0095608Whole white alabastrum(tetraploid) 216.177
CNS0095609Whole white alabastrum(tetraploid) 351.092
CNS0095610Silvery flower (tetraploid) 133.651
CNS0095611Silvery flower (tetraploid) 230.943
CNS0095612Silvery flower (tetraploid) 335.588
CNS0095613Golden flower (tetraploid) 110.205
CNS0095614Golden flower (tetraploid) 221.995
CNS0095615Golden flower (tetraploid) 316.568
CRA001975CRR073297Stem 179.643
CRR073298Stem 274.792
CRR073299Stem 373.570
CRR073300Leaf 1100.268
CRR073301Leaf 288.780
CRR073302Leaf 384.232
CRR073303Juvenile bud 185.275
CRR073304Juvenile bud 296.135
CRR073305Juvenile bud 3120.668
CRR073306Third green 151.952
CRR073307Third green 238.249
CRR073308Third green 354.161
CRR073309Second white 124.255
CRR073310Second white 221.756
CRR073311Second white 320.516
CRR073312Silver flowering 121.043
CRR073313Silver flowering 216.076
CRR073314Silver flowering 310.681
CRR073315Gold flowering 1104.774
CRR073316Gold flowering 2187.186
CRR073317Gold flowering 389.212
CRR073318Tawny withering 1113.718
CRR073319Tawny withering 264.493
CRR073320Tawny withering 3113.696