Gene detail

Detail information of GWHGAAZE028787

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010648652.1	0	PREDICTED: cellulose synthase A catalytic subunit 1 [UDP-forming] [Vitis vinifera]
COG	YP_002489496.1	5E-17	cellulose synthase
Swissprot	tr\|O48946\|CESA1_ARATH	0	Cellulose synthase A catalytic subunit 1 [UDP-forming]
trEMBL	tr\|F6H311\|F6H311_VITVI	0	Cellulose synthase {ECO:0000256\|RuleBase:RU361116}
TAIR10	AT4G32410.1	0	cellulose synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	69020795	69032637	+
GWHAAZE00000008	mRNA	69020795	69032637	+
GWHAAZE00000008	exon	69020795	69020875	+
GWHAAZE00000008	exon	69021982	69022177	+
GWHAAZE00000008	exon	69022277	69022457	+
GWHAAZE00000008	exon	69023547	69023662	+
GWHAAZE00000008	exon	69023795	69023981	+
GWHAAZE00000008	exon	69024652	69024918	+
GWHAAZE00000008	exon	69025831	69026176	+
GWHAAZE00000008	exon	69026453	69026590	+
GWHAAZE00000008	exon	69026693	69026818	+
GWHAAZE00000008	exon	69027345	69027557	+
GWHAAZE00000008	exon	69028105	69028372	+
GWHAAZE00000008	exon	69029293	69029489	+
GWHAAZE00000008	exon	69030867	69031217	+
GWHAAZE00000008	exon	69032050	69032637	+
GWHAAZE00000008	CDS	69020795	69020875	+
GWHAAZE00000008	CDS	69021982	69022177	+
GWHAAZE00000008	CDS	69022277	69022457	+
GWHAAZE00000008	CDS	69023547	69023662	+
GWHAAZE00000008	CDS	69023795	69023981	+
GWHAAZE00000008	CDS	69024652	69024918	+
GWHAAZE00000008	CDS	69025831	69026176	+
GWHAAZE00000008	CDS	69026453	69026590	+
GWHAAZE00000008	CDS	69026693	69026818	+
GWHAAZE00000008	CDS	69027345	69027557	+
GWHAAZE00000008	CDS	69028105	69028372	+
GWHAAZE00000008	CDS	69029293	69029489	+
GWHAAZE00000008	CDS	69030867	69031217	+
GWHAAZE00000008	CDS	69032050	69032637	+

Transcript Sequence
>GWHTAAZE028821 ATGGAGGCAAATGCTGGATTGGTGGCTGGATCTCACAATAGGAATGAGCTTGTGAGAATTAGGCATGATTCTGATAGTGGGCCCAAGCCCCTTAAGAATTTGAATGGCCAGATTTGTCAGATTTGTGGAGATACTGTTGGATTAACGGCCACTGGAGATGTCTTTGTTGCTTGCAATGAATGTGCATTTCCAGTTTGCCGGCCTTGCTACGAATATGAACGGAGAGATGGAAATCAATCATGCCCTCAGTGCAAGACTAGATATAAAAGACTCAAAGGGAGTCCTCGAGTTGATGGTGATGATGATGAGGATGAGGTTGATGACTTGGAAAATGAGTTCAATTATGGGCAAGGAAATGTAAAGGCGAGACGCCAGTGGCAAGGGGAAGATGCTGATCTGTCTTCATCCTCTAGGCATGAATCTCAACGTCCGATCCTCTTCTCACTAATGGGCAAGTGGTATCTGGTGAAATTCCTAGTGCTACGCCTGATAATCAATCTGTGCGAAGTACATTCAGGTCCTTTGGGCCCCAGCGACAAGCACTCACTTCCATATATTGATCCAAGGCAACCAGTTCCTGTAAGAATTGTGGACCCATCTAAGGACTTGAATTCTTATGGTCTTGGAAATGTTGACTGGAAGGAAAGAGTTGAAGGATGGAAAATAAAACAGGACAAGAATATGATGCAAATGACAAACAGGTACCCTGAAGGGAAAGGGGACATTGAAGGCACGGGGTCTAATGGAGAAGAACTGCAAATGGCTGGTGATGCTCGCCAACCTTTGAGCCGTGTGGTGTCCATTTCTTCATCTCACTTGACCCCTTATCGGGTTGTGATCATACTTAGGTTGATTATTTTGGGTTTTTTCTTGCAATATCGTGTTACTCACCCGGTGAAGGATGCATATCCCTTGTGGCTAACATCGGTTATCTGTGAGATTTGGTTTGCCTTGTCTTGGCTTTTGGATCAATTCCCAAAGTGGTGCCCGGTCGAACGTGAGACCTACCTCGACAGGCTCGCATTGAGATATGATAGAGAAGGGGAGCCTTCACAACTAGCCCCGGTGGATGTATTTGTGAGTACGGTGGATCCTTTGAAAGAACCTCCTCTTATTACTGCAAACACCGTGTTGTCCATTCTTTCTGTGGATTACCCTGTCGACAAAGTCTCGTGTTATGTTTCTGACGATGGGTCTGCAATGTTAACCTTTGAGTCCCTCTCTGAGACGGCCGAGTTTGCGAGGAAATGGGTCCCATTTTGCAAGAAGCACCACATTGAGCCGAGGGCCCCCGAGTTTTATTTTGCTCAGAAGATTGATTACTTGAAGGACAAGATTCAGCCTTCTTTTGTCAAAGAGCGCCGTGCAATGAAAAGAGAATATGAAGAATTTAAGGTAAGAATCAACGCGCTTGTAGCTAAAGCACAAAAGATGCCTGAAGAAGGTTGGACAATGCAAGATGGAACTCCCTGGCCTGGGAACAATCCTAGGGATCACCCCGGAATGATCCAGGTGTTCTTGGGGCACAGTGGAGGACTTGATACTGATGGAAATGAGCTACCACGTCTGGTTTATGTTTCTCGTGAGAAGCGTCCAGGATTTCAACATCACAAGAAAGCTGGAGCCATGAATGCTTTGATTCGAGTATCGGCTGTTCTCACAAACGGTGCATATCTATTGAATGTTGATTGTGATCACTACTTCAATAATAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGATCCGGCTTATGGAAAGAAAACTTGCTACGTTCAGTTTCCTCAGCGTTTTGACGGCATTGATTTGCATGATCGATATGCTAATCGCAACATTGTCTTCTTTGATATTAACTTGAAGGGTTTAGATGGTATACAAGGTCCAGTTTATGTGGGAACAGGTTGTTGTTTCAACAGGCAAGCTCTTTATGGATATGACCCTGTTCTAACGGAGGCCGATTTGGAACCAAACATTATTTTCAAAAGTTGTTGTGGTTCAAGGAAGAAGGGCAGAAACGCCAACAAGAAGTATATTGATACTAAAAAGAGAGCTGCAAAAAGAACTGAATCATCCATTCCCATTTTCAATATGGAAGACATTGATGACGGTGTTGAAGCGTACGATGAAGAGAAGTCACTTCTTATGTCTCAGAAGAGTTTAGAGAAACGATTTGGTCAGTCCCCGGTTTTTATAGCGGCAACCTTTATGGAGCAAGGGGGCATTCCACCAACGACCAACCCGGCCACACTTTTGAAAGAGGCAATCCATGTTATTAGCTGTGGATACGAGGACAAGAGTGAATGGGGAAAAGAGATTGGATGGATCTATGGTTCAGTTACGGAAGATATTTTAACCGGATTTAAAATGCACGCCAGAGGATGGATTTCGATCTATTGCATGCCGCCCCGCCCAGCATTCAAGGGATCGGCTCCAATCAATCTTTCTGATAGATTGAACCAAGTTCTTCGATGGGCATTAGGGTCCATTGAAATCTTGTTGAGCAGGCATTGTCCCATATGGTATGGGTATAATGGTAAATTGAAGCTTTTGGAGAGGGTGGCATATATAAATACCATTGTCTATCCTCTCACTTCTATCCCACTTATTGCTTATTGTATTCTTCCCGCCGTCTGCCTCCTCACCGGAAAGTTCATCATTCCCGAGATAAGCAACTTAGCTAGTATGTGGTTCATTCTCCTCTTCGCCTCGATTATTGCTACCGGCATCCTTGAGCTTCGGTGGAGCGGCATTAGCATCGATGACTGGTGGAGAAACGAACAATTTTGGGTCATTGGTGGAACTTCGGCCCATCTCTTTGCCGTCTTTCAAGGTCTCCTCAAAGTACTCGCTGGTATCGACACCAACTTCACTGTCACCTCAAAAGCATCCGACGAGGATGGTGACTTTGCTGAGCTATACCTCTTTAAATGGACAGCGCTCCTAATCCCACCTACCACGGTCCTCATAGTCAACCTAGTAGGCATAGTGGCGGGCGTTTCTTATGCCATAAATAGCGGGTACCAATCGTGGGGCCCACTACTGGGCAAACTGTTTTTCGCCATTTGGGTCATTGTCCACTTGTATCCCTTCCTCAAGGGTTTGTTGGGCCGGCAAAACCGCACGCCCACCATTGTTATTGTGTGGTCTATCCTTCTCGCCTCAATATTCTCACTCCTATGGGTTAGGATTGACCCGTTTACATCGGACGCTACAAAATCCGCTGCAAGAGGTCAATGTGGAATTGATTGCTAG

Network for GWHGAAZE028787

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14569.7	zf-UDP	29	106	4.10E-44
PF03552.15	Cellulose_synt	356	1074	0

Protein Sequence

>GWHPAAZE028805
MEANAGLVAGSHNRNELVRIRHDSDSGPKPLKNLNGQICQICGDTVGLTATGDVFVACNECAFPVCRPCYEYERRDGNQSCPQCKTRYKRLKGSPRVDGDDDEDEVDDLENEFNYGQGNVKARRQWQGEDADLSSSSRHESQRPILFSLMGKWYLVKFLVLRLIINLCEVHSGPLGPSDKHSLPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKIKQDKNMMQMTNRYPEGKGDIEGTGSNGEELQMAGDARQPLSRVVSISSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWCPVERETYLDRLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILSVDYPVDKVSCYVSDDGSAMLTFESLSETAEFARKWVPFCKKHHIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIFKSCCGSRKKGRNANKKYIDTKKRAAKRTESSIPIFNMEDIDDGVEAYDEEKSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPATLLKEAIHVISCGYEDKSEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGKLKLLERVAYINTIVYPLTSIPLIAYCILPAVCLLTGKFIIPEISNLASMWFILLFASIIATGILELRWSGISIDDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYLFKWTALLIPPTTVLIVNLVGIVAGVSYAINSGYQSWGPLLGKLFFAIWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDATKSAARGQCGIDC

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0030244	biological_process	cellulose biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016760	molecular_function	cellulose synthase (UDP-forming) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.547
	SRR3591706	second leaf	62.412
	SRR3591707	mature leaf	25.412
	SRR3591708	Shoot apex	44.225
	SRR3591709	Stem	48.160
	SRR3591710	White floral bud	44.140
	SRR3591711	White flower	32.230
	SRR3591712	Green floral bud	60.053
	SRR3591713	Yellow flower	17.008
SRP173429	SRR8316895	Juvenile bud stage	26.095
	SRR8316896	Juvenile bud stage	31.125
	SRR8316897	Juvenile bud stage	14.240
	SRR8316894	Third green stage	18.177
	SRR8316900	Third green stage	48.995
	SRR8316901	Third green stage	48.112
	SRR8316898	Complete white stage	12.538
	SRR8316899	Complete white stage	51.170
	SRR8316903	Complete white stage	26.154
	SRR8316902	Silver flowering stage	8.239
	SRR8316904	Silver flowering stage	15.130
	SRR8316905	Silver flowering stage	6.003
	SRR8316906	Gold flowering stage	19.620
	SRR8316907	Gold flowering stage	17.744
	SRR8316908	Gold flowering stage	20.802
SRP132670	SRR6706286	Control	53.745
	SRR6706287	Light intensity 50%	61.320
	SRR6706288	Light intensity 20%	65.655
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.842
	CNS0095593	Slightly white alabastrum(diploid) 2	24.285
	CNS0095594	Slightly white alabastrum(diploid) 3	19.139
	CNS0095595	Whole white alabastrum(diploid) 2	20.494
	CNS0095596	Whole white alabastrum(diploid) 3	16.810
	CNS0095597	Whole white alabastrum(diploid) 4	19.585
	CNS0095598	Silvery flower (diploied) 1	23.301
	CNS0095599	Silvery flower (diploied) 2	19.050
	CNS0095600	Silvery flower (diploied) 3	29.573
	CNS0095601	Golden flower (diploid) 1	15.406
	CNS0095602	Golden flower (diploid) 2	26.011
	CNS0095603	Golden flower (diploid) 3	26.182
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.931
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.630
	CNS0095606	Slightly white alabastrum(tetraploid) 3	76.520
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.403
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.261
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.614
	CNS0095610	Silvery flower (tetraploid) 1	23.471
	CNS0095611	Silvery flower (tetraploid) 2	19.901
	CNS0095612	Silvery flower (tetraploid) 3	22.068
	CNS0095613	Golden flower (tetraploid) 1	7.040
	CNS0095614	Golden flower (tetraploid) 2	18.778
	CNS0095615	Golden flower (tetraploid) 3	12.493
CRA001975	CRR073297	Stem 1	57.325
	CRR073298	Stem 2	57.613
	CRR073299	Stem 3	51.897
	CRR073300	Leaf 1	72.548
	CRR073301	Leaf 2	70.397
	CRR073302	Leaf 3	59.751
	CRR073303	Juvenile bud 1	57.648
	CRR073304	Juvenile bud 2	55.863
	CRR073305	Juvenile bud 3	80.235
	CRR073306	Third green 1	25.731
	CRR073307	Third green 2	20.069
	CRR073308	Third green 3	29.611
	CRR073309	Second white 1	21.162
	CRR073310	Second white 2	16.428
	CRR073311	Second white 3	17.970
	CRR073312	Silver flowering 1	15.299
	CRR073313	Silver flowering 2	16.472
	CRR073314	Silver flowering 3	13.471
	CRR073315	Gold flowering 1	22.395
	CRR073316	Gold flowering 2	38.874
	CRR073317	Gold flowering 3	32.962
	CRR073318	Tawny withering 1	63.549
	CRR073319	Tawny withering 2	38.568
	CRR073320	Tawny withering 3	63.503