Gene detail

Detail information of GWHGAAZE028805

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007226190.1	7.6853E-132	hypothetical protein PRUPE_ppa015822mg, partial [Prunus persica]
COG	YP_003391696.1	1E-31	glycoside hydrolase family 28
Swissprot	tr\|Q9LW07\|PGLR3_ARATH	2E-108	Probable polygalacturonase At3g15720 (Precursor)
trEMBL	tr\|M5XN68\|M5XN68_PRUPE	3E-132	Uncharacterized protein {ECO:0000313\|EMBL:EMJ27389.1} (Fragment)
TAIR10	AT5G27530.1	6E-93	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	69500889	69514867	-
GWHAAZE00000008	mRNA	69500889	69514867	-
GWHAAZE00000008	exon	69514763	69514867	-
GWHAAZE00000008	exon	69511027	69511149	-
GWHAAZE00000008	exon	69510764	69510904	-
GWHAAZE00000008	exon	69510501	69510680	-
GWHAAZE00000008	exon	69507858	69508065	-
GWHAAZE00000008	exon	69507670	69507751	-
GWHAAZE00000008	exon	69502450	69502558	-
GWHAAZE00000008	exon	69501705	69501839	-
GWHAAZE00000008	exon	69500889	69501110	-
GWHAAZE00000008	CDS	69514763	69514867	-
GWHAAZE00000008	CDS	69511027	69511149	-
GWHAAZE00000008	CDS	69510764	69510904	-
GWHAAZE00000008	CDS	69510501	69510680	-
GWHAAZE00000008	CDS	69507858	69508065	-
GWHAAZE00000008	CDS	69507670	69507751	-
GWHAAZE00000008	CDS	69502450	69502558	-
GWHAAZE00000008	CDS	69501705	69501839	-
GWHAAZE00000008	CDS	69500889	69501110	-

Transcript Sequence
>GWHTAAZE028839 ATGACAATGGCTCCCAACCATCAATTGGATTTGAAAGTGAAGGATATCATATTCGCTGCTGGTGGTTGGGACATGGAGAAAATTGCTTTGCTTTTTTCACCTGAGGATGTGCTTGCTGTGATTGTAATGCTTTGCATTGTTTCATTTGCTCCAATTGGTAACTTCGCTACCACTTTTGATGTAGTAAAATATGGTGCAGTTGGAGATGGAAAAACTGATGACACTCAAGCTTTTCTAAAAGCATGGAACGATTTTTGTTTAGCTACTGATCATGACAATCCGACATTGAACATACCAAAGGACAAGACATTTTTACTAGGACCTTTGAACTTTAACGGTCCTTGCAAATCATCCACTCCTCGCGTTCAGGTTTTAGGAAATCTTGTGGCGCCAACTTCTCTTGCAGCATGGAAAGGATGTGTACAAAATAGTTGGATTGTCTTCTCTGCTGTGAATGGTCTTATTGTTGATGGGTCGGGTAAAATCGACGGCCAAGGTTCATTTTGGTGGAGGCAAGGCCGTCAAACCCCAACTTGTGGTATACCAACGGCCCTACGCTTCTTTAAGTGTGACAACATGAAGCTAAATGGATTAAATCATCTCAACCCTCCAAAAAATCATATGAGCATTGATCTATGCAAGGGTGCAACAATTAGTAATCTACATATAACTGCACCTGGAGATAGCCCTAACACTGATGGAATTGATATTGTTACCTCAACCCAAGTCCAAATCCATGACCTAAACATTCAAACTGGCGATGATTGTATTGCTATTAATAATGGTTCCTCTTATATCAATATTGCGAGAGTTGCATGTGGACCAGGTCATGGTATAAGTGTTGGAAGCCTAGGAGAAGGTGAAAGTTATTGTGCAGTAGAAGAAATACATGTACAAAATTGCAACTTCACCAAAAGTGAAAATGGATGTAGAATCAAGTCATGGCCGGGAGGTAGTGGGTATGCAAGGTATATAAGCTTTGTGAATATCACTCTTGATGAAGTTCAAAATCCAATTATCATTGATCAACATTATTGTGACTATGCGGAGGATGGTCCAATTCACAAATATTGCAGCGATAAGAAAAAGGCAGTGAAAATAAGTGATGTGACATACAAAAATGTTCAAGGATCATCAGCCACAAAGATAGGAATTAAATTGGATTGTAGCTCTATTGTGGGATGTGCCAACATTGCAATGGATCATGTTGATATAAGTGGAGATGGAGTCATTGTCTCTTGCAATAATGCTAAAGGAACAGCTTCTCATACCTCACCTCAAGTCCCTTGCTTATCATCTAGTTGA

Network for GWHGAAZE028805

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	95	421	2.10E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.043
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.030
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.053
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.008
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.024
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.027
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.030
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.022
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000