Detail information of GWHGAAZE028806


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG21287.10DEAD-box ATP-dependent RNA helicase 56 -like protein [Gossypium arboreum]
COGYP_006844233.19E-56ATP-dependent RNA helicase
Swissprottr|Q9LFN6|RH56_ARATH0DEAD-box ATP-dependent RNA helicase 56
trEMBLtr|A0A068UYW5|A0A068UYW5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_75 {ECO:0000313|EMBL:CDP13502.1}
TAIR10AT5G11200.23E-179DEAD/DEAH box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene6952163069525099-
GWHAAZE00000008mRNA6952163069525099-
GWHAAZE00000008exon6952163069521728-
GWHAAZE00000008exon6952181469521958-
GWHAAZE00000008exon6952325969523443-
GWHAAZE00000008exon6952352569523581-
GWHAAZE00000008exon6952378069523843-
GWHAAZE00000008exon6952412269524332-
GWHAAZE00000008exon6952444869524679-
GWHAAZE00000008exon6952480769525099-
GWHAAZE00000008five_prime_UTR6952494569525099-
GWHAAZE00000008CDS6952480769524944-
GWHAAZE00000008CDS6952444869524679-
GWHAAZE00000008CDS6952412269524332-
GWHAAZE00000008CDS6952378069523843-
GWHAAZE00000008CDS6952352569523581-
GWHAAZE00000008CDS6952325969523443-
GWHAAZE00000008CDS6952181469521958-
GWHAAZE00000008CDS6952163069521728-
Transcript Sequence

Network for GWHGAAZE028806

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.30DEAD21531.10E-33
PF00271.32Helicase_C2453521.60E-27
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12812DDX39B, UAP56, SUB2 Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.815
SRR3591706second leaf19.826
SRR3591707mature leaf19.294
SRR3591708Shoot apex60.859
SRR3591709Stem27.272
SRR3591710White floral bud25.425
SRR3591711White flower39.477
SRR3591712Green floral bud26.638
SRR3591713Yellow flower22.492
SRP173429 SRR8316895Juvenile bud stage 23.440
SRR8316896Juvenile bud stage 30.558
SRR8316897Juvenile bud stage 20.407
SRR8316894Third green stage 17.251
SRR8316900Third green stage 34.332
SRR8316901Third green stage 29.959
SRR8316898Complete white stage 9.631
SRR8316899Complete white stage 43.575
SRR8316903Complete white stage 16.378
SRR8316902Silver flowering stage15.483
SRR8316904Silver flowering stage16.088
SRR8316905Silver flowering stage7.886
SRR8316906Gold flowering stage 30.301
SRR8316907Gold flowering stage 27.054
SRR8316908Gold flowering stage 44.727
SRP132670SRR6706286Control24.795
SRR6706287Light intensity 50%24.007
SRR6706288Light intensity 20%27.586
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.001
CNS0095593Slightly white alabastrum(diploid) 219.115
CNS0095594Slightly white alabastrum(diploid) 312.605
CNS0095595Whole white alabastrum(diploid) 210.466
CNS0095596Whole white alabastrum(diploid) 311.981
CNS0095597Whole white alabastrum(diploid) 49.255
CNS0095598Silvery flower (diploied) 117.403
CNS0095599Silvery flower (diploied) 212.210
CNS0095600Silvery flower (diploied) 313.175
CNS0095601Golden flower (diploid) 111.148
CNS0095602Golden flower (diploid) 212.199
CNS0095603Golden flower (diploid) 313.472
CNS0095604Slightly white alabastrum(tetraploid) 121.830
CNS0095605Slightly white alabastrum(tetraploid) 216.177
CNS0095606Slightly white alabastrum(tetraploid) 332.722
CNS0095607Whole white alabastrum(tetraploid) 111.964
CNS0095608Whole white alabastrum(tetraploid) 28.021
CNS0095609Whole white alabastrum(tetraploid) 318.511
CNS0095610Silvery flower (tetraploid) 121.875
CNS0095611Silvery flower (tetraploid) 221.815
CNS0095612Silvery flower (tetraploid) 336.034
CNS0095613Golden flower (tetraploid) 111.606
CNS0095614Golden flower (tetraploid) 216.362
CNS0095615Golden flower (tetraploid) 322.290
CRA001975CRR073297Stem 167.088
CRR073298Stem 257.244
CRR073299Stem 367.013
CRR073300Leaf 147.607
CRR073301Leaf 243.065
CRR073302Leaf 349.368
CRR073303Juvenile bud 141.894
CRR073304Juvenile bud 226.587
CRR073305Juvenile bud 344.474
CRR073306Third green 113.820
CRR073307Third green 28.923
CRR073308Third green 315.671
CRR073309Second white 115.193
CRR073310Second white 215.549
CRR073311Second white 310.910
CRR073312Silver flowering 114.788
CRR073313Silver flowering 218.720
CRR073314Silver flowering 315.432
CRR073315Gold flowering 140.799
CRR073316Gold flowering 264.671
CRR073317Gold flowering 353.652
CRR073318Tawny withering 167.277
CRR073319Tawny withering 253.005
CRR073320Tawny withering 363.685