Gene detail

Detail information of GWHGAAZE028846

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13512.1	0	unnamed protein product [Coffea canephora]
COG	YP_003981721.1	2E-29	phospholipase D
Swissprot	tr\|Q41142\|PLDA1_RICCO	0	Phospholipase D alpha 1 (Precursor)
trEMBL	tr\|A0A068UYX6\|A0A068UYX6_COFCA	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT3G15730.1	0	phospholipase D alpha 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	70683919	70686472	-
GWHAAZE00000008	mRNA	70683919	70686472	-
GWHAAZE00000008	exon	70683919	70684352	-
GWHAAZE00000008	exon	70684466	70685094	-
GWHAAZE00000008	exon	70685247	70686472	-
GWHAAZE00000008	CDS	70685247	70686472	-
GWHAAZE00000008	CDS	70684466	70685094	-
GWHAAZE00000008	CDS	70683919	70684352	-

Transcript Sequence
>GWHTAAZE028880 ATAGTTGGTTCGAAACTTTACGCGACCGTTGATCTAGATAAGGCTAGAATTGCGAGGACAAGAATTCTAGAAAACGAACCATCGAATCCTCGTTGGTTCGAGTCTTTTCGCATTTATTGTGCCCACACTGTTTCGAATGTTATATTCACAGTCAAGGATCAAGACACCATTGGCACAACGTTGATCGGAAGAGCTTATTTGCCTGTCGAAGATATCATAAACGGGTATCAGGTGGACAGATGGATTAAAATATTAGACGAAGAAGGTGATCCTATACAAGGAGGTTCGAGAATTCATGTCAAGATCCAATTTTCCCGTGTTACCCAAGATATTAATTGGTCTAGAGGGATCAAAAGCCTCGACGGAGTCCCTTATACTTTCTTCAGGCAAAGAGAAAATTGTCTTGTAACATTGTACCAAGATGCACATATCCCCAATGACTACTACGCCGAGTTTCTAACTTCTAAAGGGCTTTATAAGCCTCAAAGATGTTGGGAGGATATATTTGATGCGTTAAGTGATGCAAAACATTTGATTTATATAACTGGGTGGTCTGTTTATACTAAGATCACTCTAGTAAGGGACACAAGAAGGCCTAAACCCGGAGGAGATATCACACTTGGTGAGTTACTGATTAAGAAGGCAAATGAAGGTGTGCGTGTACTTATGCTTATTTGGGACGATAGAACCTCGGTCGCACAGTATAAGAAGGATGGTTTGATGGCGACCCACGATCAAGAAACGTGGGACTACTTTCGGAACACAAATGTACATTGCATTTTATGCCCTCGTAATCCCGATAATGGAAGGAGTAGACTTCAAGGGATAGAGGTTGCGACCATGTTTACTCACCATCAAAAGACTATAGTGGTGGATAGTGAAGCTCAAGAAGGATCATCCAAGAGGAGGATTGTGAGCTTTGTTGGGGGCATTGATCTTTGTGATGGTCGCTATGATACTCAAGATCACCCTTTGTTTTTGACTTTGGATACCGTGCATCGCGATGATTTTCATCAACCCAATTTCCCTGACTCGTCAATCAGAAAAGGTGGTCCAAGAGAGCCCTGGCATGACATTCATTGCCGCCTGGAGGGGTCTGTTGCCTGGGATGTACTATACAATTTCGAACAGAGATGGCACAAGCAAGTTGGTAATCAGTTCATTTTTTCACTCAACGAGCTTGGAGACATCATTGTCCCCCCATCTCCGGTGGCAACCTCACAAGGGGACAACGAGACATGGAACGTTCAAATATTCCGGTCCATCGACGGTGGAGCTGTAACTGGCTTCCCAGAAAAACCTGAAGATGCAGCCGCAGTCGGCCTTGTTAGCGGGAAGGACAACACCATTGACCGAAGCATACATGACGCGTATATCAATGCCATTCGGCGCGCTAAAGACTTTATTTACATCGAAAACCAATATTTTCTCGGAAGCTCATATGGGTGGAACTCCAACGATATTAAAGATGCGGACATTGGTGCATTACACCTTATACCGAAGGAACTATCATTGAAGATTGTGAGTAAAATTGAAGCAGGGGAAAGATTTGCCGTCTACATTGTGATACCAATGTGGCCAGAAGGTATACCTGAGAGTGCTTCAGTTCAAGCGATATTGGATTGGCAAAGGAGGACAATGGAAATGATGTACATTGATATTGCTAGCGCAATTAAATCCATGGGAATTGATGCAAATCCAAAAGACTATTTATCATTTTTTTGTCTTGGAAATCGCGAGGCCAAAAAAATGGGGGAGTATATTCCTCCAGAGCAACCTGAGCCCGATACAGATTATAGTAGAGCTCAACAGTCGAGGCGCTTCATGATCTATGTCCATGCAAAAATGATGATAGTTGATGATGAATACATAATCATTGGATCGGCAAACATCAACCAAAGGTCGATGGACGGTGGGAGGGACTCGGAGATTGCAATGGGAGCTTATCAACCCCATCATATCGGAACCACAATACCACCAAGAGGAAGTATATTCGGCTTCCGAATGGCTTTATGGGCTGAACACCTTTACCAGGTGCCCGAGCCATTCCACTTCCCACAAAGTCTCGAATGCATTCGATTGATAAATTCACTTGCTGATGAAAACTGGAATAATTACTCAAACAATACATTCGCTAATGACCTTGTATCCCATCTTCTTCGCTACCCCGTGGCGGTCTCAAGTACCGGGGAGATTAGCACATTGCCTGGGGTCGAGTTTTTCCCTGACACGAAGGCTAAGATTCTTGGTACTAAATCTGAATTTCTTCCTCCAATTCTCACTACTTAA

Network for GWHGAAZE028846

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	4	84	3.90E-13
PF00614.23	PLDc	280	317	5.70E-10
PF00614.23	PLDc	609	635	1.20E-07
PF12357.9	PLD_C	683	752	1.40E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.346
	SRR3591706	second leaf	3.461
	SRR3591707	mature leaf	0.073
	SRR3591708	Shoot apex	1.964
	SRR3591709	Stem	5.132
	SRR3591710	White floral bud	1.459
	SRR3591711	White flower	0.918
	SRR3591712	Green floral bud	2.884
	SRR3591713	Yellow flower	0.089
SRP173429	SRR8316895	Juvenile bud stage	0.939
	SRR8316896	Juvenile bud stage	1.312
	SRR8316897	Juvenile bud stage	0.563
	SRR8316894	Third green stage	0.345
	SRR8316900	Third green stage	2.012
	SRR8316901	Third green stage	2.060
	SRR8316898	Complete white stage	0.019
	SRR8316899	Complete white stage	0.525
	SRR8316903	Complete white stage	0.298
	SRR8316902	Silver flowering stage	0.032
	SRR8316904	Silver flowering stage	0.060
	SRR8316905	Silver flowering stage	0.015
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.455
	SRR6706287	Light intensity 50%	0.309
	SRR6706288	Light intensity 20%	0.420
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.059
	CNS0095593	Slightly white alabastrum(diploid) 2	3.607
	CNS0095594	Slightly white alabastrum(diploid) 3	2.948
	CNS0095595	Whole white alabastrum(diploid) 2	1.314
	CNS0095596	Whole white alabastrum(diploid) 3	1.074
	CNS0095597	Whole white alabastrum(diploid) 4	0.717
	CNS0095598	Silvery flower (diploied) 1	0.454
	CNS0095599	Silvery flower (diploied) 2	0.116
	CNS0095600	Silvery flower (diploied) 3	0.024
	CNS0095601	Golden flower (diploid) 1	0.193
	CNS0095602	Golden flower (diploid) 2	0.029
	CNS0095603	Golden flower (diploid) 3	0.094
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.358
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.748
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.641
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.056
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.580
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.878
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.106
	CNS0095612	Silvery flower (tetraploid) 3	0.281
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.022
	CNS0095615	Golden flower (tetraploid) 3	0.022
CRA001975	CRR073297	Stem 1	0.912
	CRR073298	Stem 2	0.967
	CRR073299	Stem 3	0.424
	CRR073300	Leaf 1	2.044
	CRR073301	Leaf 2	2.233
	CRR073302	Leaf 3	0.939
	CRR073303	Juvenile bud 1	0.106
	CRR073304	Juvenile bud 2	0.036
	CRR073305	Juvenile bud 3	0.239
	CRR073306	Third green 1	0.058
	CRR073307	Third green 2	0.083
	CRR073308	Third green 3	0.108
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.081
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.243
	CRR073316	Gold flowering 2	0.300
	CRR073317	Gold flowering 3	0.184
	CRR073318	Tawny withering 1	2.108
	CRR073319	Tawny withering 2	1.022
	CRR073320	Tawny withering 3	1.818