Gene detail

Detail information of GWHGAAZE028891

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG23753.1	2.49768E-88	Vesicle-associated membrane protein [Gossypium arboreum]
Swissprot	tr\|O49377\|VA711_ARATH	5E-78	Vesicle-associated membrane protein 711
trEMBL	tr\|I3S1N5\|I3S1N5_LOTJA	4E-88	Uncharacterized protein {ECO:0000313\|EMBL:AFK34177.1}
TAIR10	AT4G32150.1	1E-63	vesicle-associated membrane protein 711

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	72178080	72181758	+
GWHAAZE00000008	mRNA	72178080	72181758	+
GWHAAZE00000008	exon	72178080	72178341	+
GWHAAZE00000008	exon	72179370	72179443	+
GWHAAZE00000008	exon	72179572	72179683	+
GWHAAZE00000008	exon	72180557	72180747	+
GWHAAZE00000008	exon	72181528	72181758	+
GWHAAZE00000008	CDS	72178080	72178341	+
GWHAAZE00000008	CDS	72179370	72179443	+
GWHAAZE00000008	CDS	72179572	72179683	+
GWHAAZE00000008	CDS	72180557	72180747	+
GWHAAZE00000008	CDS	72181528	72181758	+

Transcript Sequence
>GWHTAAZE028925 ATGACGATTCTGTATTCGCTTGTGGCGAGGGGATCTGTGGTGTTGGCGGAATTCAGCGGCACTACCACCAACGCCAGCGCGATCGCGAGGCAAATTCTGGAGAAAACTACTGGTACCGATGATATGAATGTTTCGTATTCTCAAGATCGGTATATTTTCCACGTCAAGCGCACCGATGGCCTCACCGTTCTTTGTATGGCTGATGATACTGCCGGAAGTAAGAATAATTTGATTTCTCCTTTTCTCATTTTGAATGTTGATTCCTTATGGGATAATTGGGAGGAGGGATTAACTTTCAAGGTAGAAGTCCTCAAATTGTTTGTGGCACATCATAAGGGTGATGCTGTGGTGGTTATTTCCACTCTTAGTAGTGAAGATCCCAATCTTTCTTCCACCGGTATTCTAGTAGAAGAGGTCAAAAGAAGGAGGCATCATATTCGTACGGATGGGAGAATTCCTTTTGCATTCCTCGAAGATATGCATCAGAAATTTGTGAGGACTTATGGTCGAGCAGTTCTGTCTGCCCAAGCATATGCCATGAATGATGAGTTCTCAAGGGTTCTGAGCCAACAAATGGATTATTACTCAAATGATCCAAATGCAGATAGGATAAACCGATTAAAAGGTGAAATGAGCCAGGTACGGAATACGATGATAGAAAATATTGATAAAGTTCTAGACAGAGGTGATCGGTTGGAGTTGCTGGTTGATAAAACTGCCAATTTTCAAGGAAATACTTTTCGCTTCAGAAAGCAGGCTCGCCGTTTCAGAAGCACCGTCTGGTGGAGAAATGTCAAGCTCACGTATGTTATCGTAACCTCCTTTGCATTCTTTCTCTTAATCTCTGAGCATTTCCCTAATCCCTCATAA

Network for GWHGAAZE028891

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13774.7	Longin	29	74	9.90E-08
PF13774.7	Longin	151	185	9.20E-07
PF00957.22	Synaptobrevin	201	281	7.60E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08515	VAMP7	SNARE interactions in vesicular transport	map04130

Gene Ontology

GO term	Ontology	Name
GO:0016192	biological_process	vesicle-mediated transport
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.921
	SRR3591706	second leaf	28.069
	SRR3591707	mature leaf	21.058
	SRR3591708	Shoot apex	39.605
	SRR3591709	Stem	43.744
	SRR3591710	White floral bud	38.230
	SRR3591711	White flower	28.902
	SRR3591712	Green floral bud	67.316
	SRR3591713	Yellow flower	27.716
SRP173429	SRR8316895	Juvenile bud stage	24.806
	SRR8316896	Juvenile bud stage	35.054
	SRR8316897	Juvenile bud stage	14.868
	SRR8316894	Third green stage	15.579
	SRR8316900	Third green stage	64.748
	SRR8316901	Third green stage	58.871
	SRR8316898	Complete white stage	33.354
	SRR8316899	Complete white stage	103.055
	SRR8316903	Complete white stage	30.896
	SRR8316902	Silver flowering stage	15.263
	SRR8316904	Silver flowering stage	22.463
	SRR8316905	Silver flowering stage	11.996
	SRR8316906	Gold flowering stage	30.520
	SRR8316907	Gold flowering stage	26.464
	SRR8316908	Gold flowering stage	25.862
SRP132670	SRR6706286	Control	59.614
	SRR6706287	Light intensity 50%	69.070
	SRR6706288	Light intensity 20%	81.246
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.431
	CNS0095593	Slightly white alabastrum(diploid) 2	51.563
	CNS0095594	Slightly white alabastrum(diploid) 3	30.255
	CNS0095595	Whole white alabastrum(diploid) 2	45.198
	CNS0095596	Whole white alabastrum(diploid) 3	43.061
	CNS0095597	Whole white alabastrum(diploid) 4	48.335
	CNS0095598	Silvery flower (diploied) 1	28.454
	CNS0095599	Silvery flower (diploied) 2	27.153
	CNS0095600	Silvery flower (diploied) 3	42.721
	CNS0095601	Golden flower (diploid) 1	25.144
	CNS0095602	Golden flower (diploid) 2	39.515
	CNS0095603	Golden flower (diploid) 3	35.108
	CNS0095604	Slightly white alabastrum(tetraploid) 1	53.389
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.360
	CNS0095606	Slightly white alabastrum(tetraploid) 3	72.846
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.990
	CNS0095608	Whole white alabastrum(tetraploid) 2	50.177
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.288
	CNS0095610	Silvery flower (tetraploid) 1	39.926
	CNS0095611	Silvery flower (tetraploid) 2	44.739
	CNS0095612	Silvery flower (tetraploid) 3	44.846
	CNS0095613	Golden flower (tetraploid) 1	26.492
	CNS0095614	Golden flower (tetraploid) 2	32.129
	CNS0095615	Golden flower (tetraploid) 3	31.153
CRA001975	CRR073297	Stem 1	38.104
	CRR073298	Stem 2	40.394
	CRR073299	Stem 3	43.694
	CRR073300	Leaf 1	64.936
	CRR073301	Leaf 2	63.847
	CRR073302	Leaf 3	81.131
	CRR073303	Juvenile bud 1	97.525
	CRR073304	Juvenile bud 2	109.024
	CRR073305	Juvenile bud 3	82.606
	CRR073306	Third green 1	58.851
	CRR073307	Third green 2	60.446
	CRR073308	Third green 3	58.472
	CRR073309	Second white 1	40.436
	CRR073310	Second white 2	29.422
	CRR073311	Second white 3	19.218
	CRR073312	Silver flowering 1	21.727
	CRR073313	Silver flowering 2	27.441
	CRR073314	Silver flowering 3	18.949
	CRR073315	Gold flowering 1	27.254
	CRR073316	Gold flowering 2	30.422
	CRR073317	Gold flowering 3	30.559
	CRR073318	Tawny withering 1	58.411
	CRR073319	Tawny withering 2	46.786
	CRR073320	Tawny withering 3	76.367