Gene detail

Detail information of GWHGAAZE028898

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011081531.1	PREDICTED: heparanase-like protein 3 [Sesamum indicum]
Swissprot	tr\|Q9FZP1\|HPSE3_ARATH	Heparanase-like protein 3 (Precursor)
trEMBL	tr\|A0A022PXI1\|A0A022PXI1_ERYGU	Uncharacterized protein {ECO:0000313\|EMBL:EYU20239.1}
TAIR10	AT5G34940.2	glucuronidase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	72347820	72354840	-
GWHAAZE00000008	mRNA	72347820	72354840	-
GWHAAZE00000008	exon	72347820	72348197	-
GWHAAZE00000008	exon	72348274	72348373	-
GWHAAZE00000008	exon	72349234	72349359	-
GWHAAZE00000008	exon	72349447	72349636	-
GWHAAZE00000008	exon	72349768	72349998	-
GWHAAZE00000008	exon	72351905	72352053	-
GWHAAZE00000008	exon	72352407	72352596	-
GWHAAZE00000008	exon	72352682	72352718	-
GWHAAZE00000008	exon	72354598	72354840	-
GWHAAZE00000008	CDS	72354598	72354840	-
GWHAAZE00000008	CDS	72352682	72352718	-
GWHAAZE00000008	CDS	72352407	72352596	-
GWHAAZE00000008	CDS	72351905	72352053	-
GWHAAZE00000008	CDS	72349768	72349998	-
GWHAAZE00000008	CDS	72349447	72349636	-
GWHAAZE00000008	CDS	72349234	72349359	-
GWHAAZE00000008	CDS	72348274	72348373	-
GWHAAZE00000008	CDS	72347820	72348197	-

Transcript Sequence
>GWHTAAZE028932 ATGGTTTATTTGTTTAACATATTGGGTTTGTGTTTATGGCTTTATTTGGCTAGCAGTGGCCTCTCACAAAAGACTGGCTTATATTCCTCTGTTAATATTGTTGAAGGAAGTGTTTATGTAAATGGAACAGCTTCAATTGGTTATATTGATGAAGACTTCATTTGTGCAACATTGGATTGGTGGCCTCCTACTAAATGTGACTATGGTACTTGTAGTTGGGGTAGTGCCTCTCTTCTCAATTTGGACCTTAACAACCCAATATTGTTAAATGCAATCAAAGCATTTTCTCCATTAAAAATAAGACTTGGAGGAACTCTACAAGACAAATTGATATACCAAAGCATAGGCGATCAAACTCAAATATCTTGTGATCAATTTGTCAAGAATGTTAATGACATGTTTGGATTCTCCCAAGGTTGTTTACCTATGTCTAGGTGGGATCAACTCAACATTTTCTTCACAAACTCTGGAGCAAAGGTAATATTTGGGCTGAATGCTTTAAATGGGAGAAAAATAGGTTCAGATGGTGGAGCAGTAGGAGCATGGAATTCCAGTAATGCAGAATCTCTCATAAGATATACTGTCAACAAGGGTTACCCCATTTATGGCTGGGAACTTGGAAATGAACTAAGTGGGAGTGGAATTGGAGCAAGCGTAGCAGCAGATCAATATGCCACTGACATAATAAATCTGCAGAAATTAGTGCAAAATATATACAATGGATTTCAAGTAAAGCCAATAGTGCTTGGACCAGGAGGGTTCTTTGATGTCAATTGGTTCACTCAATTTGTCTATAAAACTTCCAACTCTCTTCAAGTGGTCACTCACCACATTTATAACCTTGGTCCAGGTGTTGACAATCACTTGGTTGACAAGATACTTGATCCGGCTTATCTGGATGGAGGAGCGGAGCCATTCAAGAACCTCGAAAGCATTCTCAAGAAAGCTGGAACTTCAGCTGTAGCATGGGTTGGCGAAGCCGGAGGGGCTTTCAATAGTGGCCATAATCTTGTCACCAATTCATTCGTCTTTAGTTTTTGGTATTTGGATCAGCTAGGGATGACATCAACTTATGATACAAAAACATACTGCAGACAAACACTTGTAGGTGGAAACTATGGACTACTTGACACACTTACCTTTCTTCCTAATCCTGATTATTACAGTGCTCTTCTTTGGCACCGATTAATGGGGAGAAAAGTTTTATCAACGAGCTTCTCTGGGACAAAAAAGATACGTGCTTATACTCACTGTTCCAAAAATTCAAAAGGAATCACATTGCTCTTGATCAACCTAGATGGTAAAACAACAGCTCAAGTTGGAGTTTCAGTCGAAAATGGAACGACAAATGAGATATTAAGGCTGCAAGAAATGCAGGGAAATCAAAGAACAAAGTTTTCTCGGATGTCTCAGTATCCTGGGATTAGTGGATATACAAAAGAAGAATATCATTTGACGGCTAAGGATGGGAATTTGCAGAGCCAAACAGTGCTCTTGAATGGGCAAATATTAAGTGTGAATTCTTCAGGGATGATTCCATCTTTGGATCCTATGAAAGTAAACTTATCAGATCCAATAACAGTTGCGCCTTTCTCTATTGTATTTGCCCACTTACCTAGCATTCAAGTTTCAGCATGTTTGTAG

Network for GWHGAAZE028898

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03662.15	Glyco_hydro_79n	36	353	2.40E-151

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07964	HPSE	Metabolic pathways	map01100
K07964	HPSE	Glycosaminoglycan degradation	map00531

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0016798	molecular_function	hydrolase activity, acting on glycosyl bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.229
	SRR3591706	second leaf	1.754
	SRR3591707	mature leaf	6.460
	SRR3591708	Shoot apex	0.574
	SRR3591709	Stem	4.059
	SRR3591710	White floral bud	0.759
	SRR3591711	White flower	0.965
	SRR3591712	Green floral bud	0.139
	SRR3591713	Yellow flower	2.749
SRP173429	SRR8316895	Juvenile bud stage	0.081
	SRR8316896	Juvenile bud stage	0.081
	SRR8316897	Juvenile bud stage	0.104
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.073
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.036
	SRR8316902	Silver flowering stage	0.475
	SRR8316904	Silver flowering stage	0.899
	SRR8316905	Silver flowering stage	0.463
	SRR8316906	Gold flowering stage	0.828
	SRR8316907	Gold flowering stage	2.048
	SRR8316908	Gold flowering stage	1.905
SRP132670	SRR6706286	Control	0.038
	SRR6706287	Light intensity 50%	0.057
	SRR6706288	Light intensity 20%	0.065
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.165
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.174
	CNS0095595	Whole white alabastrum(diploid) 2	0.139
	CNS0095596	Whole white alabastrum(diploid) 3	0.034
	CNS0095597	Whole white alabastrum(diploid) 4	0.241
	CNS0095598	Silvery flower (diploied) 1	0.271
	CNS0095599	Silvery flower (diploied) 2	0.388
	CNS0095600	Silvery flower (diploied) 3	0.050
	CNS0095601	Golden flower (diploid) 1	0.103
	CNS0095602	Golden flower (diploid) 2	0.057
	CNS0095603	Golden flower (diploid) 3	0.287
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.243
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.279
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.685
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.333
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.124
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.038
	CNS0095610	Silvery flower (tetraploid) 1	0.091
	CNS0095611	Silvery flower (tetraploid) 2	0.384
	CNS0095612	Silvery flower (tetraploid) 3	0.178
	CNS0095613	Golden flower (tetraploid) 1	0.600
	CNS0095614	Golden flower (tetraploid) 2	0.833
	CNS0095615	Golden flower (tetraploid) 3	0.021
CRA001975	CRR073297	Stem 1	0.036
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.044
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.008
	CRR073306	Third green 1	0.032
	CRR073307	Third green 2	0.463
	CRR073308	Third green 3	0.168
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.273
	CRR073313	Silver flowering 2	0.032
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.094
	CRR073316	Gold flowering 2	1.483
	CRR073317	Gold flowering 3	1.500
	CRR073318	Tawny withering 1	0.648
	CRR073319	Tawny withering 2	1.474
	CRR073320	Tawny withering 3	1.339