Gene detail

Detail information of GWHGAAZE028926

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011036625.1	0	PREDICTED: flotillin-like protein 4 [Populus euphratica]
COG	YP_005270032.1	8E-10	flotillin
Swissprot	tr\|D2XNQ8\|FLOT1_MEDTR	0	Flotillin-like protein 1
trEMBL	tr\|B9IL19\|B9IL19_POPTR	0	Nodulin family protein {ECO:0000313\|EMBL:EEF03453.1}
TAIR10	AT5G25250.1	0	SPFH/Band 7/PHB domain-containing membrane-associated protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	73128987	73131057	+
GWHAAZE00000008	mRNA	73128987	73131057	+
GWHAAZE00000008	exon	73128987	73129283	+
GWHAAZE00000008	exon	73129815	73130444	+
GWHAAZE00000008	exon	73130542	73131057	+
GWHAAZE00000008	CDS	73128987	73129283	+
GWHAAZE00000008	CDS	73129815	73130444	+
GWHAAZE00000008	CDS	73130542	73131057	+

Transcript Sequence
>GWHTAAZE028960 ATGTATAGAGTAGCGAGTGCATCGGAATACTTAGTAATCACCGGAGTGGGCATCACCGACATAAAAATAGCGAAAAAGGCATGGATACTCCCGGGCCAATCCTACACCATCTTTGATATCTCTCCGGTCAACTACACCTTTGAAGTCCAAGCCATGAGTGCCGAGAAACTCCCCTTTGTCCTCCCGGCCGTATTCACCATCGGGCCCCGCATCGACGATGACGAAAGCCTCCTTAAATACGCGAAACTCATCTCCCCACATGACAAACTCTCCCACCACGTCAAAGAGCTCGTACAAGGTATCATTGAAGGTGAAACTCGTGTCTTAGCCGCCTCCATGACGATGGAAGAAGTATTCAAAGGAACAAAAGAATTCAAACAAGAAGTATTTGAAAAAGTACAATTAGAACTCAACCAGTTCGGGCTTTTGATCTACAATGCGAATGTCAAACAGCTTGTGGATGTTCCCGGGCACGAGTACTTCTCTTATTTGGGCCAAAAGACGCAAATGGAGGCTGCAAATCAAGCCAAAGTTGACGTTTCCGAGGCCAAAATGAAGGGCTCTATCGGGTCCAAATTAAGGGAAGGGAAAACGCTTCAAAATGCGGCGAAAATTGACGCTGAGACTAAGATTATTGCGACACAAAGGGATGGGGACGGTAAAAAAGAGGAGATTAAAGTGAGGACTGAGGTGAAGGTTTTTGAGAACCAAAGGGAGGCTGAGGTGGCAGAGGCAAATGCTGACTTGGCAAAGAAGAAGGCCGGGTGGGCCAAGGAGGCACAGGTGGCGGAGGTGGAGGCCATGAAGGCGGTGGCTCTGAGGGATGCCGAGTTGCAAAAGGAGGTGGAGACTATGAATGCTTTGACGAGGGTTGAGATGCTTAAGGCCGAGTACTTGAGTAAGGCTACAGTCGAATATGAAACTAAGGTGCAAGAGGCAAATTGGGAGCTTTATAGGAAGCAGAAAGCCGCGGAAGCAATTCTATACGAGAAAGAAAAAGAAGCCGAGGCACAAAAAGCCATAGCTGAGGCCTCGTTTTATTCGCGTCAACAAGTAGCTGATGGAGAATTATACACGAAGCAAAAAGAAGCCGAAGGACTTTTAGCGCTCGCACAAGCACAAGGCACTTATATACGCACACTCTTAGACGCGTTGGGAGGTAACTACGGTGCACTGAGGGATTATTTGATGATAAATGGTGGTATGTTTCAAGATATTGCGAAGATCAATGCTGAGGCAGTGCGTGGACTACAGCCGAAGATTAGCATTTGGTCGAATGGTGGAAGTGGTGGTGTTGATGCGGTGGATGGTGGTGGGAGTGGTAGTAATGCTATGAAGGAGGTGGCCGGAGTTTATAGAATGTTGCCGCCGTTGTTTAACACGGTTCATGAGCAAACAGGAATGCTGCCACCGGCGTGGATGGGGACTTTGACTGACTCTTAA

Network for GWHGAAZE028926

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01145.26	Band_7	9	183	5.80E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07192	FLOT	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.173
	SRR3591706	second leaf	0.126
	SRR3591707	mature leaf	0.096
	SRR3591708	Shoot apex	0.125
	SRR3591709	Stem	0.216
	SRR3591710	White floral bud	0.563
	SRR3591711	White flower	1.537
	SRR3591712	Green floral bud	0.312
	SRR3591713	Yellow flower	1.009
SRP173429	SRR8316895	Juvenile bud stage	1.031
	SRR8316896	Juvenile bud stage	1.501
	SRR8316897	Juvenile bud stage	0.299
	SRR8316894	Third green stage	0.186
	SRR8316900	Third green stage	0.140
	SRR8316901	Third green stage	0.430
	SRR8316898	Complete white stage	0.263
	SRR8316899	Complete white stage	0.131
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.354
	SRR8316904	Silver flowering stage	0.583
	SRR8316905	Silver flowering stage	0.678
	SRR8316906	Gold flowering stage	1.525
	SRR8316907	Gold flowering stage	1.520
	SRR8316908	Gold flowering stage	1.096
SRP132670	SRR6706286	Control	0.974
	SRR6706287	Light intensity 50%	0.698
	SRR6706288	Light intensity 20%	0.624
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.224
	CNS0095593	Slightly white alabastrum(diploid) 2	0.194
	CNS0095594	Slightly white alabastrum(diploid) 3	0.470
	CNS0095595	Whole white alabastrum(diploid) 2	0.028
	CNS0095596	Whole white alabastrum(diploid) 3	0.296
	CNS0095597	Whole white alabastrum(diploid) 4	0.110
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.046
	CNS0095600	Silvery flower (diploied) 3	0.264
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.292
	CNS0095603	Golden flower (diploid) 3	0.232
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.468
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.109
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.098
	CNS0095610	Silvery flower (tetraploid) 1	0.037
	CNS0095611	Silvery flower (tetraploid) 2	0.077
	CNS0095612	Silvery flower (tetraploid) 3	0.071
	CNS0095613	Golden flower (tetraploid) 1	0.848
	CNS0095614	Golden flower (tetraploid) 2	0.803
	CNS0095615	Golden flower (tetraploid) 3	0.012
CRA001975	CRR073297	Stem 1	0.302
	CRR073298	Stem 2	0.216
	CRR073299	Stem 3	0.316
	CRR073300	Leaf 1	0.358
	CRR073301	Leaf 2	0.303
	CRR073302	Leaf 3	0.202
	CRR073303	Juvenile bud 1	0.093
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.889
	CRR073307	Third green 2	0.126
	CRR073308	Third green 3	0.486
	CRR073309	Second white 1	0.082
	CRR073310	Second white 2	0.046
	CRR073311	Second white 3	0.173
	CRR073312	Silver flowering 1	0.469
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.409
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.198
	CRR073317	Gold flowering 3	0.150
	CRR073318	Tawny withering 1	1.490
	CRR073319	Tawny withering 2	0.882
	CRR073320	Tawny withering 3	0.685