Gene detail

Detail information of GWHGAAZE028927

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002324888.1	0	nodulin family protein [Populus trichocarpa]
COG	YP_005432249.1	0.000000004	putative flotillin-like protein
Swissprot	tr\|D2XNQ8\|FLOT1_MEDTR	0	Flotillin-like protein 1
trEMBL	tr\|B9IL19\|B9IL19_POPTR	0	Nodulin family protein {ECO:0000313\|EMBL:EEF03453.1}
TAIR10	AT5G25250.1	0	SPFH/Band 7/PHB domain-containing membrane-associated protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	73134327	73136534	+
GWHAAZE00000008	mRNA	73134327	73136534	+
GWHAAZE00000008	exon	73134327	73134623	+
GWHAAZE00000008	exon	73135310	73135939	+
GWHAAZE00000008	exon	73136022	73136534	+
GWHAAZE00000008	CDS	73134327	73134623	+
GWHAAZE00000008	CDS	73135310	73135939	+
GWHAAZE00000008	CDS	73136022	73136534	+

Transcript Sequence
>GWHTAAZE028961 ATGTATAGAGTAGCAAGCGCATCGGAATACTTAGTAATCACCGGATTCGGAATCACTGATATAAAAATTGCGAAAAAAGCATGGATATTCCCCGGCCAATCCTACACGATCTTCGATATCACACCGGTCAACTACACCTTTGAAGTCCAGGCCATGAGCGCCGAGAAACTCCCCTTTGTCCTCCCGGCCGTGTTCACCATTGGGCCCCGCATCGACGACGACTTAAGCCTCCTCAAATACGCGAAACTCATCTCCCCACATGACAAACTCTCCCACCATGTGAAAGAGCTTGTACAAGGTATCATTGAAGGTGAAACTCGTGTCTTAGCTGCCTCCATGACAATGGAAGAAGTATTCAAAGGAACAAAAGAATTCAAACAAGAAGTATTTGAAAAAGTACAATTAGAACTCAACCAGTTCGGGCTTCTGATCTACAACGCGAATGTCAAACAACTTGTGGATGTGCCAGGGCACGAGTACTTCTCTTATTTGGGCCAAAAGACGCAAATGGAGGCTGCAAATCAAGCCAAAGTTGATGTTTCCGAAGCCAAAATGAAGGGTGCGATCGGGTCCAAACTAAGGGAAGGGAAAACGCTTCAAAATGAGGCGCAAATCGATGCTGAGACGAAGATTATTGCTACACAAAGGGGTGGGGATGGTAAAAAGGAGGAGATCAAAGTGAGGACCGAAGTGAAGGTTTTCGAGAACCAAAGGGAGGCTGAGGTGGCAGAGGCGAATGCTGACTTGGCAAAGAAGAAGGCTGGGTGGGCCAAGGAGGCACAGGTGGCGGAGGTGGAGGCCATGAAGGCGGTAGCTCTGAGGGATGCGGAATTGCAGAAGGAGGTGGAGTCCATGAATGCTTTGACGAGGATTGAGATGCTTAAGGCTGAATACTTGAGTAAGGCTACAGTCGAATATGAAACCAAGGTCCAAGAGGCAAATTGGGAGCTTTATAGGAAGCAGAAAGCTGCGGAAGCAATTCTATATGAGAAAGAAAAAGAAGCCGAGGCACAAAAAGCCATAGCCAAGGCCTCATTTTATGCACGTCAACAAGTCGCTGATGGAGAATTATACGCAAAGCAAAAAGAAGCTGAAGGACTTTTAGCGCTCGCACAAGCACAAGGCACTTATATACACACGCTCTTAGACGCGTTGGGAGGTAATTATGGCGCGCTGAGGGATTATTTGATGATAAATGGGGGAATGATTCAAGATATTGCGAAGATCAATGCTGAAGCAGTGCGTGGACTACAGCCGAAGATTAGCATTTGGTCGAATGGTGGCAGTGGGGTCAAGGCAGTGGATGGTGGTGGGAGTGGTGGTAATGCGATGAAGGAGGTGGCCGAAGTTTATAGAATGTTGCCGCCGTTGTTTAAGACGGTTCAGGAACAAACTGGAATGCTGCCACCGGCGTGGATGGGGACTTTGAATGACTCTTGA

Network for GWHGAAZE028927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01145.26	Band_7	5	183	7.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07192	FLOT	Insulin signaling pathway	map04910

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.195
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.007
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.061
	SRR3591711	White flower	0.098
	SRR3591712	Green floral bud	0.111
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.059
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.049
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.145
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.021
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.119
	SRR8316907	Gold flowering stage	0.011
	SRR8316908	Gold flowering stage	0.143
SRP132670	SRR6706286	Control	0.135
	SRR6706287	Light intensity 50%	0.003
	SRR6706288	Light intensity 20%	0.031
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.007
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.016
	CNS0095600	Silvery flower (diploied) 3	0.109
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.060
	CNS0095603	Golden flower (diploid) 3	0.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.008
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.028
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.088
	CNS0095614	Golden flower (tetraploid) 2	0.035
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.098
	CRR073298	Stem 2	0.098
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.120
	CRR073301	Leaf 2	0.126
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.149
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.090
	CRR073308	Third green 3	0.042
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.014
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.007
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.003
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.014
	CRR073318	Tawny withering 1	0.021
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000