Detail information of GWHGAAZE028930


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010265706.10PREDICTED: homeobox protein knotted-1-like 3 isoform X2 [Nelumbo nucifera]
Swissprottr|P48000|KNAT3_ARATH0Homeobox protein knotted-1-like 3
trEMBLtr|F6H3V2|F6H3V2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46841.1}
TAIR10AT5G25220.14E-143KNOTTED1-like homeobox gene 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene7318953173196180-
GWHAAZE00000008mRNA7318953173196180-
GWHAAZE00000008exon7319587273196180-
GWHAAZE00000008exon7319535273195716-
GWHAAZE00000008exon7319370273193744-
GWHAAZE00000008exon7319160773191727-
GWHAAZE00000008exon7319041173190604-
GWHAAZE00000008exon7319017173190302-
GWHAAZE00000008exon7318963673189772-
GWHAAZE00000008exon7318953173189552-
GWHAAZE00000008CDS7319587273196180-
GWHAAZE00000008CDS7319535273195716-
GWHAAZE00000008CDS7319370273193744-
GWHAAZE00000008CDS7319160773191727-
GWHAAZE00000008CDS7319041173190604-
GWHAAZE00000008CDS7319017173190302-
GWHAAZE00000008CDS7318963673189772-
GWHAAZE00000008CDS7318953173189552-
Transcript Sequence

Network for GWHGAAZE028930

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03790.14KNOX11612014.70E-18
PF03791.14KNOX22402792.00E-12
PF03789.14ELK3373589.50E-07
PF05920.12Homeobox_KN3774162.20E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHB-KNOX

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.384
SRR3591706second leaf114.322
SRR3591707mature leaf126.409
SRR3591708Shoot apex55.033
SRR3591709Stem27.536
SRR3591710White floral bud78.778
SRR3591711White flower172.150
SRR3591712Green floral bud54.913
SRR3591713Yellow flower134.818
SRP173429 SRR8316895Juvenile bud stage 40.138
SRR8316896Juvenile bud stage 41.207
SRR8316897Juvenile bud stage 30.011
SRR8316894Third green stage 15.616
SRR8316900Third green stage 36.477
SRR8316901Third green stage 37.248
SRR8316898Complete white stage 34.698
SRR8316899Complete white stage 88.042
SRR8316903Complete white stage 59.467
SRR8316902Silver flowering stage41.831
SRR8316904Silver flowering stage56.140
SRR8316905Silver flowering stage28.941
SRR8316906Gold flowering stage 94.489
SRR8316907Gold flowering stage 78.654
SRR8316908Gold flowering stage 116.465
SRP132670SRR6706286Control55.409
SRR6706287Light intensity 50%62.676
SRR6706288Light intensity 20%64.273
CNP0000432CNS0095592Slightly white alabastrum(diploid) 131.968
CNS0095593Slightly white alabastrum(diploid) 226.258
CNS0095594Slightly white alabastrum(diploid) 324.079
CNS0095595Whole white alabastrum(diploid) 225.337
CNS0095596Whole white alabastrum(diploid) 320.641
CNS0095597Whole white alabastrum(diploid) 420.718
CNS0095598Silvery flower (diploied) 144.297
CNS0095599Silvery flower (diploied) 241.375
CNS0095600Silvery flower (diploied) 3110.443
CNS0095601Golden flower (diploid) 145.022
CNS0095602Golden flower (diploid) 2101.959
CNS0095603Golden flower (diploid) 394.915
CNS0095604Slightly white alabastrum(tetraploid) 124.722
CNS0095605Slightly white alabastrum(tetraploid) 217.713
CNS0095606Slightly white alabastrum(tetraploid) 358.782
CNS0095607Whole white alabastrum(tetraploid) 114.965
CNS0095608Whole white alabastrum(tetraploid) 213.545
CNS0095609Whole white alabastrum(tetraploid) 336.966
CNS0095610Silvery flower (tetraploid) 1142.983
CNS0095611Silvery flower (tetraploid) 288.282
CNS0095612Silvery flower (tetraploid) 393.945
CNS0095613Golden flower (tetraploid) 1112.233
CNS0095614Golden flower (tetraploid) 2129.281
CNS0095615Golden flower (tetraploid) 396.393
CRA001975CRR073297Stem 175.122
CRR073298Stem 266.284
CRR073299Stem 377.993
CRR073300Leaf 188.700
CRR073301Leaf 286.463
CRR073302Leaf 371.424
CRR073303Juvenile bud 184.891
CRR073304Juvenile bud 288.889
CRR073305Juvenile bud 3102.270
CRR073306Third green 1154.510
CRR073307Third green 2129.064
CRR073308Third green 3155.074
CRR073309Second white 173.323
CRR073310Second white 2106.134
CRR073311Second white 378.291
CRR073312Silver flowering 1111.328
CRR073313Silver flowering 2126.634
CRR073314Silver flowering 3123.890
CRR073315Gold flowering 1158.358
CRR073316Gold flowering 2202.308
CRR073317Gold flowering 3125.135
CRR073318Tawny withering 1133.521
CRR073319Tawny withering 2100.943
CRR073320Tawny withering 3121.323