Detail information of GWHGAAZE028945


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002515442.12.9742E-177ccr4-associated factor, putative [Ricinus communis]
Swissprottr|Q9SKZ2|CAF1G_ARATH6E-161Probable CCR4-associated factor 1 homolog 7
trEMBLtr|B9RNX3|B9RNX3_RICCO1E-177Ccr4-associated factor, putative {ECO:0000313|EMBL:EEF46891.1}
TAIR10AT2G32070.11E-127Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000008gene7357226973573090+
GWHAAZE00000008mRNA7357226973573090+
GWHAAZE00000008exon7357226973573090+
GWHAAZE00000008CDS7357226973573090+
Transcript Sequence

Network for GWHGAAZE028945

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04857.21CAF1151361.80E-12
PF04857.21CAF11612434.60E-06
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12581CNOT7_8, CAF1, POP2 RNA degradation map03018

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf100.053
SRR3591706second leaf52.772
SRR3591707mature leaf69.670
SRR3591708Shoot apex82.472
SRR3591709Stem122.672
SRR3591710White floral bud70.412
SRR3591711White flower106.397
SRR3591712Green floral bud63.485
SRR3591713Yellow flower93.158
SRP173429 SRR8316895Juvenile bud stage 48.594
SRR8316896Juvenile bud stage 64.641
SRR8316897Juvenile bud stage 30.552
SRR8316894Third green stage 24.601
SRR8316900Third green stage 74.102
SRR8316901Third green stage 69.126
SRR8316898Complete white stage 41.991
SRR8316899Complete white stage 115.405
SRR8316903Complete white stage 59.389
SRR8316902Silver flowering stage51.423
SRR8316904Silver flowering stage63.705
SRR8316905Silver flowering stage29.565
SRR8316906Gold flowering stage 108.801
SRR8316907Gold flowering stage 98.801
SRR8316908Gold flowering stage 112.870
SRP132670SRR6706286Control37.886
SRR6706287Light intensity 50%38.937
SRR6706288Light intensity 20%38.761
CNP0000432CNS0095592Slightly white alabastrum(diploid) 155.767
CNS0095593Slightly white alabastrum(diploid) 254.400
CNS0095594Slightly white alabastrum(diploid) 348.027
CNS0095595Whole white alabastrum(diploid) 244.277
CNS0095596Whole white alabastrum(diploid) 338.452
CNS0095597Whole white alabastrum(diploid) 443.104
CNS0095598Silvery flower (diploied) 165.485
CNS0095599Silvery flower (diploied) 256.578
CNS0095600Silvery flower (diploied) 385.049
CNS0095601Golden flower (diploid) 161.208
CNS0095602Golden flower (diploid) 292.154
CNS0095603Golden flower (diploid) 387.867
CNS0095604Slightly white alabastrum(tetraploid) 152.738
CNS0095605Slightly white alabastrum(tetraploid) 244.821
CNS0095606Slightly white alabastrum(tetraploid) 386.608
CNS0095607Whole white alabastrum(tetraploid) 143.990
CNS0095608Whole white alabastrum(tetraploid) 233.810
CNS0095609Whole white alabastrum(tetraploid) 356.096
CNS0095610Silvery flower (tetraploid) 184.165
CNS0095611Silvery flower (tetraploid) 279.759
CNS0095612Silvery flower (tetraploid) 384.003
CNS0095613Golden flower (tetraploid) 167.950
CNS0095614Golden flower (tetraploid) 278.194
CNS0095615Golden flower (tetraploid) 3106.399
CRA001975CRR073297Stem 157.960
CRR073298Stem 260.884
CRR073299Stem 366.388
CRR073300Leaf 166.902
CRR073301Leaf 260.419
CRR073302Leaf 365.565
CRR073303Juvenile bud 174.696
CRR073304Juvenile bud 257.101
CRR073305Juvenile bud 355.163
CRR073306Third green 154.181
CRR073307Third green 248.867
CRR073308Third green 347.997
CRR073309Second white 175.581
CRR073310Second white 262.123
CRR073311Second white 363.218
CRR073312Silver flowering 168.774
CRR073313Silver flowering 253.872
CRR073314Silver flowering 353.248
CRR073315Gold flowering 146.876
CRR073316Gold flowering 266.285
CRR073317Gold flowering 346.635
CRR073318Tawny withering 170.889
CRR073319Tawny withering 274.217
CRR073320Tawny withering 378.052