Gene detail

Detail information of GWHGAAZE028947

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008220690.1	PREDICTED: chaperone protein ClpB4, mitochondrial [Prunus mume]
COG	YP_007121403.1	ATP-dependent chaperone ClpB
Swissprot	tr\|Q8VYJ7\|CLPB4_ARATH	Chaperone protein ClpB4, mitochondrial (Precursor)
trEMBL	tr\|A0A061GIX1\|A0A061GIX1_THECC	Casein lytic proteinase B4 {ECO:0000313\|EMBL:EOY29363.1}
TAIR10	AT2G25140.1	casein lytic proteinase B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	73588306	73604775	+
GWHAAZE00000008	mRNA	73588306	73604775	+
GWHAAZE00000008	exon	73588306	73588458	+
GWHAAZE00000008	exon	73590911	73591129	+
GWHAAZE00000008	exon	73591204	73591441	+
GWHAAZE00000008	exon	73593028	73593223	+
GWHAAZE00000008	exon	73594870	73594924	+
GWHAAZE00000008	exon	73601517	73601667	+
GWHAAZE00000008	exon	73601951	73602259	+
GWHAAZE00000008	exon	73603042	73603307	+
GWHAAZE00000008	exon	73603405	73604334	+
GWHAAZE00000008	exon	73604467	73604775	+
GWHAAZE00000008	five_prime_UTR	73588306	73588458	+
GWHAAZE00000008	five_prime_UTR	73590911	73590934	+
GWHAAZE00000008	CDS	73590935	73591129	+
GWHAAZE00000008	CDS	73591204	73591441	+
GWHAAZE00000008	CDS	73593028	73593223	+
GWHAAZE00000008	CDS	73594870	73594924	+
GWHAAZE00000008	CDS	73601517	73601667	+
GWHAAZE00000008	CDS	73601951	73602259	+
GWHAAZE00000008	CDS	73603042	73603307	+
GWHAAZE00000008	CDS	73603405	73604334	+
GWHAAZE00000008	CDS	73604467	73604775	+

Transcript Sequence
>GWHTAAZE028981 GTTCCAACCCCCAATTTCTCCTCCATTCCCTTCGCAAAAGGGGTCGCTTATTTGCCCAAATCAACCTACTCCTCCTCCTCCTTCAATCTTTCAATTTGGGCTAATTTATCTGCTGCCACTCGCTCTTACTCCACTACCGCCAGCTCCGCTCAGATTAATAACTCAGAGTTTACGGAAATGGCATGGGAGGGAATTGTTGGTGCCGTTGATGCAGCACGGGCTAGCAAACAGCAAGTAGTGGAAACTGAACATTTAATGAAAGCTCTTTTAGAGCAGAAGGATGGGTTGGCCCGAAGAATATTCGCCAAGGCTGGGCTTGACAACACTTCAGTTTTGCATGCTACGGATGAATTTATATCTCAACAACCCAAGGTGTTTGGTGAGACCAGTGGCCCTATGGTTGGCTCACATCTTCAGTCTCTGTTGGAGAATGCTAGAAAGCATAAAAAAGAAATGAAAGATGATTTTGTGTCTGTAGAGCATCTAGTGTTAGCATTCCCTTCGGACAAGAGATTTGGGGAGCGGTTGTTGAGAAACTTGCAGCTTAGTGAGAAGGCTTTGAAGGATGCTGTTCAAGCTGTTCGTGGAAGTCAGAGAGTAACTGATCAAAATCCTGAAGGTAAATATGAAGCTCTTGAAAAGTATGGGACTGACTTGACTGAACTTGCTAGAAGCGGTAAACTTGATCCGGTTATAGGTCGGGATGATGAAATACGACGGTGCATCCAGATTTTATCTCGGAGAACAAAGAATAATCCTGTCATTATTGGTGAGCCTGGCGTTGGTAAAACAGCAATTGCTGAAGGGTTAGCTCAACGAATTTACCGTGGGGATGTTCCCGAGCCCCTTTTGAATCGCAAGTTGATCTCCCTGGACATGGGTTCGTTGCTTGCTGGTGCTAAGTTCCGAGGAGATTTTGAGGAAAGGCTCAAAGCAGTCTTGAAGGAAGTCACGCATTCAAATGGGCAGATTATTTTGTTTATTGATGAGATACATACTGTGGTGGGTGCAGGGGCTACTAGTGGAGCAATGGATGCTGGTAACTTACTGAAACCGATGCTTGGGCGAGGAGAGCTGAGATGTATTGGAGCAACTACATTGAATGAATATAGGAAGTACATTGAGAAGGACCCTGCTCTCGAACGTAGATTTCAACAAGTATTTTGTGGGCAGCCATCTGTAGAGGACTCTATTTCCATTCTTCGAGGATTGCGTGAACGCTATGAGCTTCATCACGGGGTCAAAATATCTGACAGTGCCCTTGTTTCAGCAGCTGTTCTTGCTGATCGGTATATCACAGAGCGTTTTTTGCCTGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAATTAAAGATGGAAATCACTTCCAAGCCTACCGAGTTGGATGAGATAGACAGGGCTGTGCTAAAGCTAGAGATGGAAAAACTCTCTCTTCAAAATGACACCGACAAAGCATCCAAAGAAAGGTTGGCGAAGCTGGAAAGTGATTTAGAATCTCTCAAACAAAAACAGAAAGAGTTAACTGAACAATGGGAACACGAGAAAGTTCTCATGAATCAAATACGTTCAATTAAAGAGGAGATTGATAGAGTCAACCAAGAGATGGAGGCTGCTGAGCGCGAGTATGACTTGAGTCGTGCTGCTGAGCTCAAATATGGAACCCTACCTAACCTTCAAACCAAGTTAGAAAAAGCTGAAAAAGAACTTGCTGAGTACCAAAAGTCTGGGAAATCTTTGCTTCGAGAAGAAGTAACTGACCTCGATATTGCCGAAGTTGTAAGCAAATGGACAGGAATTCCCTTATCGAACCTACAGCAGTCAGAGAGGGACAAGCTTGTTTTACTAGAAGAAGTTCTGCACAAGCGGGTTATCGGTCAGGACATGGCAGTCAAATCAGTGGCTGATGCAATCCGGCGTTCACGTGCTGGGCTGTCTGATCCGAACCGACCCATAGCAAGCTTCATGTTCATGGGCCCCACCGGTGTTGGTAAAACTGAGCTCGCAAAGGCCCTTGCCGGCTACCTTTTTAATACAGAAAATGCTCTTGTGAGGATAGATATGACCGAGTACATGGAGAAACACGCGGTTTCACGCTTGGTTGGTGCACCGCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAATTGACTGAAGTGGTTCGCCGGAGGCCATATTCTGTTGTCCTTTTTGACGAAATTGAGAAGGCTCACCACGACGTTTTCAACATTTTACTACAATTGTTGGATGATGGAAGGATAACGGATTCACAAGGAAGGACAGTTAGTTTCACAAATTGTGTGGTGATAATGACGTCGAATATTGGGTCACATTATATTCTTGAAACTCTTAGAAATACACATGATAGCAAGGATGTGGTTTATGAAAAGATGAAGCGTCAGGTGGTTGAGTTGGCTAGACAAACTTTCAGGCCAGAGTTTATGAATCGGATTGATGAGTATATAGTTTTCCAACCACTTGACTCCAAAGAAATCAACAAAATTGTTGAGATCCAGATTAATCGGGTGAAGGAGAGGCTGAAACAGAAGAAGATAGATCTTTGCTACACAAAGGAAGCAATAGAGGTACTAGGAACATTAGGTTTTGATCCAAATTTTGGAGCCAGGCCAGTGAAGAGGGTGATACAACAAATGGTCGAGAATGAAGTAGCAATGAGCGTTTTAAGAGGAGATTTTAAAGAAGACGACGCAATCATAATTGATGCTGCTGATGACGTTTCAGCAGCAAAAAGTAGATTGGTTATCAAGAAGGTGGAGAGGAGTAGTAGTAGCTCTGTTATGGATGCCATGGTGGTAAATAACTGA

Network for GWHGAAZE028947

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02861.21	Clp_N	9	60	6.30E-13
PF02861.21	Clp_N	86	137	7.60E-10
PF00004.30	AAA	196	328	1.50E-13
PF17871.2	AAA_lid_9	334	436	8.80E-34
PF07724.15	AAA_2	592	761	2.20E-54
PF10431.10	ClpB_D2-small	768	847	2.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03695	clpB	Longevity regulating pathway - multiple species	map04213

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process
GO:0009408	biological_process	response to heat
GO:0042026	biological_process	protein refolding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.950
	SRR3591706	second leaf	7.908
	SRR3591707	mature leaf	8.365
	SRR3591708	Shoot apex	11.240
	SRR3591709	Stem	17.176
	SRR3591710	White floral bud	15.372
	SRR3591711	White flower	32.845
	SRR3591712	Green floral bud	15.654
	SRR3591713	Yellow flower	26.799
SRP173429	SRR8316895	Juvenile bud stage	8.923
	SRR8316896	Juvenile bud stage	16.273
	SRR8316897	Juvenile bud stage	7.749
	SRR8316894	Third green stage	5.679
	SRR8316900	Third green stage	16.195
	SRR8316901	Third green stage	12.687
	SRR8316898	Complete white stage	3.919
	SRR8316899	Complete white stage	11.988
	SRR8316903	Complete white stage	7.754
	SRR8316902	Silver flowering stage	9.148
	SRR8316904	Silver flowering stage	11.910
	SRR8316905	Silver flowering stage	5.739
	SRR8316906	Gold flowering stage	35.339
	SRR8316907	Gold flowering stage	28.707
	SRR8316908	Gold flowering stage	27.053
SRP132670	SRR6706286	Control	10.868
	SRR6706287	Light intensity 50%	10.937
	SRR6706288	Light intensity 20%	10.997
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.573
	CNS0095593	Slightly white alabastrum(diploid) 2	9.163
	CNS0095594	Slightly white alabastrum(diploid) 3	10.971
	CNS0095595	Whole white alabastrum(diploid) 2	7.984
	CNS0095596	Whole white alabastrum(diploid) 3	7.213
	CNS0095597	Whole white alabastrum(diploid) 4	7.700
	CNS0095598	Silvery flower (diploied) 1	9.340
	CNS0095599	Silvery flower (diploied) 2	9.924
	CNS0095600	Silvery flower (diploied) 3	19.223
	CNS0095601	Golden flower (diploid) 1	14.979
	CNS0095602	Golden flower (diploid) 2	19.198
	CNS0095603	Golden flower (diploid) 3	19.781
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.772
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.222
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.263
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.478
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.777
	CNS0095610	Silvery flower (tetraploid) 1	25.171
	CNS0095611	Silvery flower (tetraploid) 2	24.455
	CNS0095612	Silvery flower (tetraploid) 3	22.974
	CNS0095613	Golden flower (tetraploid) 1	14.220
	CNS0095614	Golden flower (tetraploid) 2	21.376
	CNS0095615	Golden flower (tetraploid) 3	34.799
CRA001975	CRR073297	Stem 1	14.739
	CRR073298	Stem 2	13.948
	CRR073299	Stem 3	12.623
	CRR073300	Leaf 1	18.789
	CRR073301	Leaf 2	14.142
	CRR073302	Leaf 3	11.014
	CRR073303	Juvenile bud 1	13.518
	CRR073304	Juvenile bud 2	11.025
	CRR073305	Juvenile bud 3	15.616
	CRR073306	Third green 1	6.599
	CRR073307	Third green 2	5.514
	CRR073308	Third green 3	6.600
	CRR073309	Second white 1	16.978
	CRR073310	Second white 2	29.537
	CRR073311	Second white 3	25.052
	CRR073312	Silver flowering 1	13.622
	CRR073313	Silver flowering 2	14.669
	CRR073314	Silver flowering 3	12.405
	CRR073315	Gold flowering 1	11.111
	CRR073316	Gold flowering 2	17.372
	CRR073317	Gold flowering 3	8.267
	CRR073318	Tawny withering 1	8.661
	CRR073319	Tawny withering 2	7.606
	CRR073320	Tawny withering 3	7.524