Gene detail

Detail information of GWHGAAZE028951

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010645856.1	3.6929E-139	PREDICTED: histidine--tRNA ligase [Vitis vinifera]
COG	YP_004043714.1	2E-10	histidyl-tRNA synthetase
Swissprot	tr\|P93422\|SYH_ORYSJ	6E-67	Histidine--tRNA ligase
trEMBL	tr\|F6HMX8\|F6HMX8_VITVI	4E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB56033.1}
TAIR10	AT3G02760.1	7E-77	Class II aaRS and biotin synthetases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000008	gene	73850867	73855762	+
GWHAAZE00000008	mRNA	73850867	73855762	+
GWHAAZE00000008	exon	73850867	73852216	+
GWHAAZE00000008	exon	73855078	73855138	+
GWHAAZE00000008	exon	73855218	73855336	+
GWHAAZE00000008	exon	73855661	73855762	+
GWHAAZE00000008	CDS	73850867	73852216	+
GWHAAZE00000008	CDS	73855078	73855138	+
GWHAAZE00000008	CDS	73855218	73855336	+
GWHAAZE00000008	CDS	73855661	73855762	+

Transcript Sequence
>GWHTAAZE028985 GTGGTAACTGTGGGTGGGAAAGGATCATCCCTCTCCTCAAACAAAGTCTTCGAGGTCGCCAATGGGCTCTCTCAGGTACGAATTGACGCATCTGCTTTCGCCAGGCTCTCTAGTTCTAACTCTACTTCCACTTCTCCTCAATTACCTAATAATTCTTCGATTCCCAATTACCTAACCCATGAGGAAGCCAGGGCCTCTCTCTTCGTCATATTAAACAAAAAACTACTACTCCTTTTGCTCTCTTCTGCTTCTGGCTCCTCCTCCACTTCCGCCGTCGTCCAACAGGAGCTTTCCGATCTCCTAAATGTACTCAATAGTAGCAGCAGCAGCCAATCTAGTAGTACAACAACGACGACAACTGGTGATGCTACTGCTGCTCTCCAGGGCATTTCTGCTCTTTTGGATCACAGGGCTTCTGCTCTGTCCACAGTTGCAGACGCCGTCGCATCCTTGTCTTGCGAGGCCTTAAAGGCTGACGTCGCCTCTGCTTTTGCTCTCATCGTCGACTCCGGGGATGGCACCTCTGACAAAGACCGCGTCGTTGTTGCTAATGATTTCAAGACCTTACTCAATGGCTCCAAATTGGTTGGTAAGCAGCTTCACTGCCCTGATCAAGTTTCCGATATTCCCAAGGTTCATGGTCGCTTCAGGAGTGTTTCCAGATCTCTTCACTCTGCAATGCGGGTCGAATTGAACTCGGTGGCAGGAGGCGGGACTGGTAAGGACTTGGCCACCGTTCTGTCACCTTTGGCTCTAGCCCTTCAAAATTTGGGCGAAACTAGCTGGGGCCGAGCAAAGCTTATTATTGATTCTTCTTTAGGTTTGGGTTCTAATTTTGTGGATATTTTCAACATGGGATGCCCCAATATCAATACTTTGGTGGATTTGATCAAGTGTTCCCAAGCAGCCTACCATGACAAGGACTATGTTAAGTCCTTGCACGAGATTTATAATTTATCCGAGATTGTGAGGAAGATCCTTTCCTGGGAGGCTGCAATTGCATTTCTCTCCCTTGACGGAAGTACTGAACTAATATGGGGATTGAGGGTGGCAGAGGAGCTGAGTGGAGAAAATGCCAAAGGAGGAGAGACGACAAAGAAGAACAAGGAAAAGAGGAAGAAGGTTGTTCTTGGGAAAGGGACTACTGTCCTGGTACAGCTTTTAATTGACAGGCTGAATTTGGAGACAACAGGGGTGGAGGACTGCGGTAGGTCGGCCCTAATGGAGAAATGGGCAAGGGACTTCCTTTCAATATTGAACCCCAAGGATCCAGGCTTTGAATTTCTATTGAAGAAAGTGAAAGAAATTGTCGACAGTAATGAAAGTAGAAGGCTCCCCAAGCTTCCCAAGGGTACTCGTGATTTTGCAAAGGAACAGATGGCAGTAAGAGAGAAAGCATTCTCAATTATAGGTGATGTTTTCAAGCGACATGGTGCCATGGCCCTGGATACTCCTGCCTTTGAATTGAGAGAAACTCTTATGGGAAAGTATGGGGAAGATTCAAAGTTGATTTACGATCTAGCCGACCAGAGGCTGACTAGGCAGTCCACTGATCCCCCATGTTCCTTTGCACAGTGCTCTGCTATTTTGATTCTATGTGATTCTGATTTCTCTCTTGTCACTGGGGCTTAG

Network for GWHGAAZE028951

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00221.20	Lyase_aromatic	123	235	2.60E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01892	HARS, hisS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.148
	SRR3591706	second leaf	4.962
	SRR3591707	mature leaf	4.337
	SRR3591708	Shoot apex	14.090
	SRR3591709	Stem	8.781
	SRR3591710	White floral bud	14.773
	SRR3591711	White flower	15.277
	SRR3591712	Green floral bud	15.901
	SRR3591713	Yellow flower	9.030
SRP173429	SRR8316895	Juvenile bud stage	9.651
	SRR8316896	Juvenile bud stage	12.919
	SRR8316897	Juvenile bud stage	4.632
	SRR8316894	Third green stage	5.820
	SRR8316900	Third green stage	15.072
	SRR8316901	Third green stage	11.589
	SRR8316898	Complete white stage	2.946
	SRR8316899	Complete white stage	13.854
	SRR8316903	Complete white stage	6.346
	SRR8316902	Silver flowering stage	3.863
	SRR8316904	Silver flowering stage	4.955
	SRR8316905	Silver flowering stage	2.350
	SRR8316906	Gold flowering stage	8.651
	SRR8316907	Gold flowering stage	8.236
	SRR8316908	Gold flowering stage	7.382
SRP132670	SRR6706286	Control	16.185
	SRR6706287	Light intensity 50%	17.551
	SRR6706288	Light intensity 20%	19.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.749
	CNS0095593	Slightly white alabastrum(diploid) 2	6.196
	CNS0095594	Slightly white alabastrum(diploid) 3	6.206
	CNS0095595	Whole white alabastrum(diploid) 2	6.512
	CNS0095596	Whole white alabastrum(diploid) 3	6.013
	CNS0095597	Whole white alabastrum(diploid) 4	3.748
	CNS0095598	Silvery flower (diploied) 1	8.168
	CNS0095599	Silvery flower (diploied) 2	6.892
	CNS0095600	Silvery flower (diploied) 3	14.851
	CNS0095601	Golden flower (diploid) 1	7.761
	CNS0095602	Golden flower (diploid) 2	13.198
	CNS0095603	Golden flower (diploid) 3	13.462
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.155
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.682
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.660
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.692
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.668
	CNS0095610	Silvery flower (tetraploid) 1	14.521
	CNS0095611	Silvery flower (tetraploid) 2	16.792
	CNS0095612	Silvery flower (tetraploid) 3	13.224
	CNS0095613	Golden flower (tetraploid) 1	4.630
	CNS0095614	Golden flower (tetraploid) 2	12.182
	CNS0095615	Golden flower (tetraploid) 3	9.821
CRA001975	CRR073297	Stem 1	17.789
	CRR073298	Stem 2	17.782
	CRR073299	Stem 3	16.240
	CRR073300	Leaf 1	19.286
	CRR073301	Leaf 2	15.871
	CRR073302	Leaf 3	18.525
	CRR073303	Juvenile bud 1	14.541
	CRR073304	Juvenile bud 2	12.798
	CRR073305	Juvenile bud 3	16.466
	CRR073306	Third green 1	2.163
	CRR073307	Third green 2	1.874
	CRR073308	Third green 3	2.202
	CRR073309	Second white 1	5.374
	CRR073310	Second white 2	6.009
	CRR073311	Second white 3	6.431
	CRR073312	Silver flowering 1	5.123
	CRR073313	Silver flowering 2	5.225
	CRR073314	Silver flowering 3	1.993
	CRR073315	Gold flowering 1	5.363
	CRR073316	Gold flowering 2	12.011
	CRR073317	Gold flowering 3	7.850
	CRR073318	Tawny withering 1	11.962
	CRR073319	Tawny withering 2	6.437
	CRR073320	Tawny withering 3	10.016