Gene detail

Detail information of GWHGAAZE028964

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15967.1	2.12415E-40	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	0.000000007	F-box protein CPR30
trEMBL	tr\|A0A068V5X4\|A0A068V5X4_COFCA	8E-41	Coffea canephora DH200=94 genomic scaffold, scaffold_112 {ECO:0000313\|EMBL:CDP15967.1}
TAIR10	AT3G06240.1	1E-11	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	117045	117773	+
GWHAAZE00000009	mRNA	117045	117773	+
GWHAAZE00000009	exon	117045	117321	+
GWHAAZE00000009	exon	117430	117773	+
GWHAAZE00000009	CDS	117045	117321	+
GWHAAZE00000009	CDS	117430	117773	+

Transcript Sequence
>GWHTAAZE028998 ATGGTTACCCCAAAGTCTCTTCTCCGATTCAGGTGTGTCTCTAAATCTTGGTGCTCTCTAATTTCAAGCCCTAGTTTCATTGATATCCACACACGCATCCTCCCTCACGTCACCAACACTCGCAAACTCATCCGCCACTGCACTACTACATCTCATCGCAAAGAAGTCTATTCAGTGTTTTTCGATAACCAATCGTCGTTTGACCGCGACGATGATGTCAAAATTGATTTCCCCTTTACTAGCACAACCGAATATAGAATTGTGGGTTCTTGTAATGTAAGGAATCCGGGATCTCTTCATGTTCTTGGATTTGGGTTTGATTGTAAGGCTAACGATTACAAGATCGTGCAACTTTCTTACAAAAATCCAGCCAGTATTCTTTCGTTGCCCCCTTCAGTTGAGGTTTTTAGTGTTAAAACTGGGGCATGGAAGGGCATTAGTACTCCTGCTCCTCTGTGTCATATCGGCGGGGATCTCTGGCGCCACAGATTCGTTAATGGAGCTGCACATTGGGTCGCTTGTACTCAGAATTGCGGACAAAATCACAGTTTGATTTTGTCCTTTGATATGTGTGATGAGGTCTTTCGTGAGATTAAGTTGCCTGAATGTTTAGCGGCTTAA

Network for GWHGAAZE028964

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	3	26	0.00028

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.201
	SRR3591706	second leaf	0.553
	SRR3591707	mature leaf	0.284
	SRR3591708	Shoot apex	0.867
	SRR3591709	Stem	0.592
	SRR3591710	White floral bud	1.446
	SRR3591711	White flower	2.436
	SRR3591712	Green floral bud	2.461
	SRR3591713	Yellow flower	1.455
SRP173429	SRR8316895	Juvenile bud stage	2.488
	SRR8316896	Juvenile bud stage	3.117
	SRR8316897	Juvenile bud stage	1.733
	SRR8316894	Third green stage	1.457
	SRR8316900	Third green stage	3.702
	SRR8316901	Third green stage	3.943
	SRR8316898	Complete white stage	1.102
	SRR8316899	Complete white stage	4.870
	SRR8316903	Complete white stage	2.395
	SRR8316902	Silver flowering stage	0.574
	SRR8316904	Silver flowering stage	1.061
	SRR8316905	Silver flowering stage	0.569
	SRR8316906	Gold flowering stage	1.470
	SRR8316907	Gold flowering stage	1.865
	SRR8316908	Gold flowering stage	2.233
SRP132670	SRR6706286	Control	3.315
	SRR6706287	Light intensity 50%	3.644
	SRR6706288	Light intensity 20%	3.357
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.128
	CNS0095593	Slightly white alabastrum(diploid) 2	2.625
	CNS0095594	Slightly white alabastrum(diploid) 3	1.375
	CNS0095595	Whole white alabastrum(diploid) 2	2.211
	CNS0095596	Whole white alabastrum(diploid) 3	1.196
	CNS0095597	Whole white alabastrum(diploid) 4	2.135
	CNS0095598	Silvery flower (diploied) 1	2.242
	CNS0095599	Silvery flower (diploied) 2	2.506
	CNS0095600	Silvery flower (diploied) 3	2.776
	CNS0095601	Golden flower (diploid) 1	2.284
	CNS0095602	Golden flower (diploid) 2	2.477
	CNS0095603	Golden flower (diploid) 3	2.453
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.099
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.828
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.183
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.210
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.970
	CNS0095610	Silvery flower (tetraploid) 1	3.062
	CNS0095611	Silvery flower (tetraploid) 2	2.695
	CNS0095612	Silvery flower (tetraploid) 3	1.373
	CNS0095613	Golden flower (tetraploid) 1	1.185
	CNS0095614	Golden flower (tetraploid) 2	2.378
	CNS0095615	Golden flower (tetraploid) 3	0.656
CRA001975	CRR073297	Stem 1	2.430
	CRR073298	Stem 2	3.147
	CRR073299	Stem 3	1.669
	CRR073300	Leaf 1	3.654
	CRR073301	Leaf 2	3.103
	CRR073302	Leaf 3	1.524
	CRR073303	Juvenile bud 1	1.838
	CRR073304	Juvenile bud 2	1.489
	CRR073305	Juvenile bud 3	2.316
	CRR073306	Third green 1	0.021
	CRR073307	Third green 2	0.007
	CRR073308	Third green 3	0.100
	CRR073309	Second white 1	0.078
	CRR073310	Second white 2	0.113
	CRR073311	Second white 3	0.129
	CRR073312	Silver flowering 1	0.141
	CRR073313	Silver flowering 2	0.189
	CRR073314	Silver flowering 3	0.365
	CRR073315	Gold flowering 1	3.511
	CRR073316	Gold flowering 2	2.571
	CRR073317	Gold flowering 3	0.517
	CRR073318	Tawny withering 1	3.039
	CRR073319	Tawny withering 2	1.346
	CRR073320	Tawny withering 3	1.852