Detail information of GWHGAAZE029021


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP23529.10hypothetical protein JCGZ_23362 [Jatropha curcas]
COGYP_003668625.17E-34mevalonate kinase
Swissprottr|P46086|KIME_ARATH1E-172Mevalonate kinase
trEMBLtr|A0A067JVG6|A0A067JVG6_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP23529.1}
TAIR10AT5G27450.38E-110mevalonate kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene24892452496061-
GWHAAZE00000009mRNA24892452496061-
GWHAAZE00000009exon24959352496061-
GWHAAZE00000009exon24937382493981-
GWHAAZE00000009exon24928742493127-
GWHAAZE00000009exon24916462492059-
GWHAAZE00000009exon24892452489354-
GWHAAZE00000009CDS24959352496061-
GWHAAZE00000009CDS24937382493981-
GWHAAZE00000009CDS24928742493127-
GWHAAZE00000009CDS24916462492059-
GWHAAZE00000009CDS24892452489354-
Transcript Sequence

Network for GWHGAAZE029021

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00288.27GHMP_kinases_N1292102.20E-18
PF08544.14GHMP_kinases_C2923571.20E-08
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00869E2.7.1.36, MVK, mvaK1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900
Peroxisomemap04146

Gene Ontology

GO term OntologyName
GO:0008299biological_processisoprenoid biosynthetic process
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0004496molecular_functionmevalonate kinase activity

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE029021.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30102030405060708090Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.662
SRR3591706second leaf32.358
SRR3591707mature leaf9.625
SRR3591708Shoot apex35.141
SRR3591709Stem44.489
SRR3591710White floral bud30.448
SRR3591711White flower38.422
SRR3591712Green floral bud29.721
SRR3591713Yellow flower27.104
SRP173429 SRR8316895Juvenile bud stage 18.643
SRR8316896Juvenile bud stage 29.802
SRR8316897Juvenile bud stage 14.138
SRR8316894Third green stage 10.809
SRR8316900Third green stage 35.726
SRR8316901Third green stage 30.348
SRR8316898Complete white stage 8.815
SRR8316899Complete white stage 36.585
SRR8316903Complete white stage 19.097
SRR8316902Silver flowering stage6.849
SRR8316904Silver flowering stage8.225
SRR8316905Silver flowering stage4.103
SRR8316906Gold flowering stage 22.111
SRR8316907Gold flowering stage 18.733
SRR8316908Gold flowering stage 42.193
SRP132670SRR6706286Control41.179
SRR6706287Light intensity 50%43.589
SRR6706288Light intensity 20%48.686
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.550
CNS0095593Slightly white alabastrum(diploid) 221.851
CNS0095594Slightly white alabastrum(diploid) 323.617
CNS0095595Whole white alabastrum(diploid) 218.550
CNS0095596Whole white alabastrum(diploid) 319.095
CNS0095597Whole white alabastrum(diploid) 419.451
CNS0095598Silvery flower (diploied) 119.838
CNS0095599Silvery flower (diploied) 219.172
CNS0095600Silvery flower (diploied) 317.859
CNS0095601Golden flower (diploid) 116.730
CNS0095602Golden flower (diploid) 218.164
CNS0095603Golden flower (diploid) 315.834
CNS0095604Slightly white alabastrum(tetraploid) 128.110
CNS0095605Slightly white alabastrum(tetraploid) 226.962
CNS0095606Slightly white alabastrum(tetraploid) 341.813
CNS0095607Whole white alabastrum(tetraploid) 120.156
CNS0095608Whole white alabastrum(tetraploid) 214.040
CNS0095609Whole white alabastrum(tetraploid) 331.713
CNS0095610Silvery flower (tetraploid) 122.915
CNS0095611Silvery flower (tetraploid) 216.711
CNS0095612Silvery flower (tetraploid) 331.470
CNS0095613Golden flower (tetraploid) 116.380
CNS0095614Golden flower (tetraploid) 221.126
CNS0095615Golden flower (tetraploid) 36.324
CRA001975CRR073297Stem 129.202
CRR073298Stem 228.989
CRR073299Stem 331.253
CRR073300Leaf 138.660
CRR073301Leaf 237.869
CRR073302Leaf 340.838
CRR073303Juvenile bud 141.107
CRR073304Juvenile bud 255.706
CRR073305Juvenile bud 377.899
CRR073306Third green 119.554
CRR073307Third green 212.134
CRR073308Third green 315.841
CRR073309Second white 111.545
CRR073310Second white 212.197
CRR073311Second white 38.904
CRR073312Silver flowering 114.128
CRR073313Silver flowering 214.655
CRR073314Silver flowering 313.691
CRR073315Gold flowering 110.307
CRR073316Gold flowering 210.599
CRR073317Gold flowering 313.892
CRR073318Tawny withering 128.735
CRR073319Tawny withering 225.316
CRR073320Tawny withering 323.512