Gene detail

Detail information of GWHGAAZE029028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP23529.1	0	hypothetical protein JCGZ_23362 [Jatropha curcas]
COG	YP_003668625.1	7E-34	mevalonate kinase
Swissprot	tr\|P46086\|KIME_ARATH	1E-172	Mevalonate kinase
trEMBL	tr\|A0A067JVG6\|A0A067JVG6_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP23529.1}
TAIR10	AT5G27450.3	8E-110	mevalonate kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	2657918	2664759	-
GWHAAZE00000009	mRNA	2657918	2664759	-
GWHAAZE00000009	exon	2664633	2664759	-
GWHAAZE00000009	exon	2662416	2662659	-
GWHAAZE00000009	exon	2661550	2661803	-
GWHAAZE00000009	exon	2660321	2660734	-
GWHAAZE00000009	exon	2657918	2658027	-
GWHAAZE00000009	CDS	2664633	2664759	-
GWHAAZE00000009	CDS	2662416	2662659	-
GWHAAZE00000009	CDS	2661550	2661803	-
GWHAAZE00000009	CDS	2660321	2660734	-
GWHAAZE00000009	CDS	2657918	2658027	-

Transcript Sequence
>GWHTAAZE029062 ATGGAGGTGAGAGCAAGAGCTCCCGGAAAGATCATACTCGCCGGCGAACATGCCGTCGTTCACGGATCCGCCGCGGTCGCCGCCTCCATCGATCTCTGCACTTACGTTACTCTCAGCTTTCCCACCGATAATGACGATACACTAAGAATCCAGCTCAAGGGTATGCACCTAGAATTTGCATGGCCAATTGGAAGAATCAGAGCCGCACTTCCTGAATTGGGTGGTTGTGTTGCTTCATCACCCAAATCATGCTCACCAGAAACCCTTAAATCGATTGCATCCCTAGTTGATGAAGTGAATATTCCAGAGGCAAATTATGGACTTGCTGCTGGAGTTACAGCTTTTATTTGGCTTTACACTTCTATCCAAGGGTATAAAGCTGGGAAAGTGGTTATCACTTCAGACCTACCACTGGGCGCTGGCTTGGGATCATCTGCAGCCTTATGTGTGTCACTTTCTGCTGCCTTGGTCTCTTTGTCAGATGCTGTGCATTTAGATGTAAGCAAGCAGGATTGGTTAATGTTAGGGGAAAAGGAGCTGGAACTAGTTAACAAATGGGCTTTTGTAGGTGAACAAATCATCCATGGAAAGCCATCTGGGATAGACAACACAGTAAGCACATTCGGGAACATGATCAAGTTCAAGTCTGGTGAATTAACGCGCATTAAGTCCAATATGCCTCTAAAAATGCTCATAACAAACACTAAAGTCGGGAGGAACACAAAAGCACTAGTTGCCGGTGTTTCAGAGAGGAAATTGAGGCACCCAATTGCAATGACTAATGTGTTCACCGCCGTTGATTCTATCAGCAATGAATTGGCTACTATTATTCAGTCTCCTGCTTCTGATGATCTTGCCGTTACTGAGAAGGAAGATAAACTTGAAGAACTAATGGAAATGAGTCAAGGATTGCTCCAATGTATGGGGGTTAGTCATCCTTCTATTGAAACCGTGCTTCGAACGACGTTGAAATACAAGCTAGCTTCCAAGTTGACCGGAGCTGGTGGTGGCGGCTGTGTTTTGACGCTATTACCATCGCGTACAATTGTTGATAAAGTAATTGCCGATCTAGAAACATCCGGCTTCAGTTGTTTGATTGCCGGAATCGGAGGGAACGGCGTCGAGATTTGCTTTGGCGATTCGTCATGA

Network for GWHGAAZE029028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00288.27	GHMP_kinases_N	129	210	2.20E-18
PF08544.14	GHMP_kinases_C	292	357	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00869	E2.7.1.36, MVK, mvaK1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0004496	molecular_function	mevalonate kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	51.538
	SRR3591706	second leaf	38.033
	SRR3591707	mature leaf	12.320
	SRR3591708	Shoot apex	42.465
	SRR3591709	Stem	55.211
	SRR3591710	White floral bud	38.826
	SRR3591711	White flower	50.819
	SRR3591712	Green floral bud	40.746
	SRR3591713	Yellow flower	32.535
SRP173429	SRR8316895	Juvenile bud stage	20.194
	SRR8316896	Juvenile bud stage	23.131
	SRR8316897	Juvenile bud stage	12.363
	SRR8316894	Third green stage	11.597
	SRR8316900	Third green stage	36.602
	SRR8316901	Third green stage	31.559
	SRR8316898	Complete white stage	9.535
	SRR8316899	Complete white stage	40.072
	SRR8316903	Complete white stage	13.862
	SRR8316902	Silver flowering stage	7.906
	SRR8316904	Silver flowering stage	8.695
	SRR8316905	Silver flowering stage	4.784
	SRR8316906	Gold flowering stage	24.669
	SRR8316907	Gold flowering stage	20.132
	SRR8316908	Gold flowering stage	51.654
SRP132670	SRR6706286	Control	36.569
	SRR6706287	Light intensity 50%	39.342
	SRR6706288	Light intensity 20%	44.899
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.220
	CNS0095593	Slightly white alabastrum(diploid) 2	20.667
	CNS0095594	Slightly white alabastrum(diploid) 3	26.697
	CNS0095595	Whole white alabastrum(diploid) 2	20.662
	CNS0095596	Whole white alabastrum(diploid) 3	17.719
	CNS0095597	Whole white alabastrum(diploid) 4	16.966
	CNS0095598	Silvery flower (diploied) 1	16.183
	CNS0095599	Silvery flower (diploied) 2	19.698
	CNS0095600	Silvery flower (diploied) 3	19.778
	CNS0095601	Golden flower (diploid) 1	14.859
	CNS0095602	Golden flower (diploid) 2	14.935
	CNS0095603	Golden flower (diploid) 3	16.681
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.280
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.863
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.851
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.259
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.876
	CNS0095610	Silvery flower (tetraploid) 1	27.084
	CNS0095611	Silvery flower (tetraploid) 2	17.166
	CNS0095612	Silvery flower (tetraploid) 3	36.258
	CNS0095613	Golden flower (tetraploid) 1	14.287
	CNS0095614	Golden flower (tetraploid) 2	23.166
	CNS0095615	Golden flower (tetraploid) 3	8.285
CRA001975	CRR073297	Stem 1	29.340
	CRR073298	Stem 2	28.158
	CRR073299	Stem 3	30.285
	CRR073300	Leaf 1	37.435
	CRR073301	Leaf 2	37.978
	CRR073302	Leaf 3	39.448
	CRR073303	Juvenile bud 1	39.767
	CRR073304	Juvenile bud 2	51.252
	CRR073305	Juvenile bud 3	51.223
	CRR073306	Third green 1	19.997
	CRR073307	Third green 2	12.484
	CRR073308	Third green 3	15.993
	CRR073309	Second white 1	11.608
	CRR073310	Second white 2	13.291
	CRR073311	Second white 3	10.453
	CRR073312	Silver flowering 1	14.494
	CRR073313	Silver flowering 2	17.342
	CRR073314	Silver flowering 3	13.854
	CRR073315	Gold flowering 1	10.004
	CRR073316	Gold flowering 2	12.622
	CRR073317	Gold flowering 3	13.449
	CRR073318	Tawny withering 1	30.979
	CRR073319	Tawny withering 2	27.830
	CRR073320	Tawny withering 3	21.303