Gene detail

Detail information of GWHGAAZE029106

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	P06215.1CHIT_PHAVU	8.12138E-76	RecName: Full=Endochitinase; Flags: Precursor [Phaseolus vulgaris]
COG	YP_003125181.1	0.000000001	chitinase
Swissprot	tr\|P06215\|CHIT_PHAVU	4E-78	Endochitinase (Precursor)
trEMBL	tr\|K9MY71\|K9MY71_9FABA	7E-76	Class Ia chitinase {ECO:0000313\|EMBL:AFY08283.1}
TAIR10	AT3G12500.1	4E-51	basic chitinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	7339708	7341399	-
GWHAAZE00000009	mRNA	7339708	7341399	-
GWHAAZE00000009	exon	7339708	7339946	-
GWHAAZE00000009	exon	7340724	7340858	-
GWHAAZE00000009	exon	7340965	7341008	-
GWHAAZE00000009	exon	7341098	7341399	-
GWHAAZE00000009	CDS	7341098	7341399	-
GWHAAZE00000009	CDS	7340965	7341008	-
GWHAAZE00000009	CDS	7340724	7340858	-
GWHAAZE00000009	CDS	7339708	7339946	-

Transcript Sequence
>GWHTAAZE029140 ATGCCTCTTGTACTTACAAATTTCATATTACTGGTGCTACTACTTATAGGTGGTGCCTCAGCACAGGAATGTGGTCGCCAAGCTGCTGGTGCAGTCTGCCTGGGTGGGCTTTGCTGTAGCGAATATGGATGGTGCGGCAACACTGCTCTTTACTGCACCCTTCCCGGCTGCCAGAGCCAATGCTGGGGTTCTCCTTCGCCGCCACCACCCCCAAGTCCTAGTGATGGGGGCATCTCCGACATCATTAGCCGCGAGCTGTTCGATGAAATGCTCAAGTACCGCAATGACCCCGTTGCCACGCGGGAAATTGCTGCTTTTCTTGGCCAAACTTCTCATGAAACTACTGGGGGTTGGGCTACCGCTGATGATGGCCAATACGCTTGGGGGTATTGCTATAATAGAGAAGTTTCGCCCGGTTGGAATTATTGTGTTCAAAATGTTCAGTACCCGTGTGCTCCAGGTCAAGCATATTATGGCCGAGGAACTTGGACCCCATCCACTGCTGATGTAGCAGCCGGCCGTCTTCCAGGGTATGGTGTTACCACAAACATTATAAATGGTGGCCTCGAATGTGGGATTGGTCCAGATTCCAGAGTTGAAGACCATATTGGATTCTATAAAATGTATTGCGACATGTTTGGAATTGATTATGGCGACAATCTTAATTGTGCCAATCAAAGGCCTTTTGGGAGTGTGGGTTTCTTGATGGATACCATGTAA

Network for GWHGAAZE029106

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00187.20	Chitin_bind_1	23	61	2.60E-12
PF00182.20	Glyco_hydro_19	161	223	8.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20547	CHIB	Metabolic pathways	map01100
		Amino sugar and nucleotide sugar metabolism	map00520
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006032	biological_process	chitin catabolic process
GO:0016998	biological_process	cell wall macromolecule catabolic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding
GO:0004568	molecular_function	chitinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.074
	SRR3591706	second leaf	177.615
	SRR3591707	mature leaf	1041.355
	SRR3591708	Shoot apex	44.504
	SRR3591709	Stem	0.209
	SRR3591710	White floral bud	21.508
	SRR3591711	White flower	28.903
	SRR3591712	Green floral bud	4.757
	SRR3591713	Yellow flower	28.469
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.251
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.019
	SRR8316901	Third green stage	0.277
	SRR8316898	Complete white stage	0.043
	SRR8316899	Complete white stage	0.216
	SRR8316903	Complete white stage	0.104
	SRR8316902	Silver flowering stage	0.139
	SRR8316904	Silver flowering stage	0.312
	SRR8316905	Silver flowering stage	0.002
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.046
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.370
	SRR6706288	Light intensity 20%	0.068
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.061
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.001
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.433
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.072
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.251
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.005
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.015
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.025
	CNS0095611	Silvery flower (tetraploid) 2	0.045
	CNS0095612	Silvery flower (tetraploid) 3	0.013
	CNS0095613	Golden flower (tetraploid) 1	0.002
	CNS0095614	Golden flower (tetraploid) 2	0.007
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.021
	CRR073298	Stem 2	0.080
	CRR073299	Stem 3	1.752
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.089
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.057
	CRR073307	Third green 2	0.145
	CRR073308	Third green 3	0.015
	CRR073309	Second white 1	0.020
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.213
	CRR073316	Gold flowering 2	0.206
	CRR073317	Gold flowering 3	0.924
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000