Gene detail

Detail information of GWHGAAZE029125

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	3.4023E-126	unnamed protein product [Coffea canephora]
COG	YP_001958461.1	1E-23	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	7E-104	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	1E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	2E-92	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8274936	8277459	+
GWHAAZE00000009	mRNA	8274936	8277459	+
GWHAAZE00000009	exon	8274936	8276355	+
GWHAAZE00000009	exon	8276624	8276719	+
GWHAAZE00000009	exon	8277221	8277459	+
GWHAAZE00000009	CDS	8274936	8276355	+
GWHAAZE00000009	CDS	8276624	8276719	+
GWHAAZE00000009	CDS	8277221	8277459	+

Transcript Sequence
>GWHTAAZE029159 ATGGGCTTCCATTTTGGCCTTCTGAACATGATTGCAACTGCAGTGACAATTATAATCACTATATTGCATATCATAGTCTATAAACTTCGACAACTTCGCGACACAAACTTTGCCAAGAATTCGGACATTTCATCATCCCAACAAATAGCAGAAGCAAACCTTGGCGAGAATTTAGAAGTATTAACACCGCAACAACACCAGGAAGTGAACCTTGGCGAGGATTCAAGCATACCACCGTCGTTGAAATCAGAACAATTATGCCGTCACTTTTCACTTGATCATATCCTATTGGCCACCAACAACTTTGACGATGCATTAATCATTGGTCACGGTGGATTTGGGAAGGTGTACAAAGGGGTCATCGATGATGGGACAGTTACTGTTGCCATAAAGAGGTTAAGTACTACGTCCAAACAAGGGGCACCCCAATTTTGGACAGAGGTGGAGTTGCTTTCTAAATTTCGGCACAGCCATCTTGTTTCACTACTTGGTTACTGTAACAATCGCGATGAGATGATACTTGTTTATGAGTACATGGCTCGTGGATCCCTTGCAGATCATCTGTACAAACTTGGTCCGAATGGTAATAATTCTCTAACCTTGTCTTGGGTGCAGCGCTTAAAGATTTGCATTGGGGCAGCACAGGGTTTGGATTACCTTCATACTGGTACAGGTATCCATGATAGGGTCATACATCGTGACTTGAAGAGCTCAAACATTCTATTGGATGATAGCTGGGCAGCTAAGGTATCAGATTTTGGGCTGTCTAAAATAGGCCCCGCAAATCAGTCCGCCTCATCACATGTTAGTACCAACGTCAAAGGCACATTTGGGTATGTGGATCCTGAGTATTTGGTGACCCATAGACTCACTCGAAAGTCTGACGTTTACTCCTTTGGCGTAGTCTTGTTAGAAGTGTTGTCTGGGAGGCGGGCTGTAGATTTAAAACGCTGTGAGGAGCAGTGGGGTCTTGCTGGATGGGCCAAAGAATGCATAAAGAAAGGAGAACTAGATCAGATTATTGACCCGAATTTGAGATGGCAAATCTTGCCAAATTCTTTGACAGCATTTGTGAAAATAGCAGATCATTGCTTGCATTATCGTTCGAAAAAACGGCCTACAATGGCTGAGGTGGTGGCCTCACTTGAGTCTGCGTTGGCATTGCAAGAGAGAAGAGATTCTTCAATGTTTGAGGCAGATTTTTTTAATTTGGGAGGGACTTTTGACAACCAAGAGAATCTGGATAATTCCTTACTAGAATCCGAGGTGAATAATGGTGGTGATGGTGAGCATCTGGGTGAAGAGACAGATAATATTTTGTCATCTGGTGAGGCAAGCAATTTGCAGTCGCGTGTAAGGCCTGCCAGAATGACACCGTTCAAAAGGATGGCACGGCTGTTTTTCTTTGGAAAATCTCGAGCAAGTGAAATAAGCAACTTGGAATCCCTACAATATGACTTTGGTACTCTTAAGGTTGCGACAGATAATTTCTCTGATGCTAACAAACTTGGAAATGATCCAATCAAGCGTGCAACTTTGGATTGGGAACAGCGTTATAAAATCATTAGAGGTGTTGCTCGGGGGCTTCTTTATCTTCATGAAGATTCTCCCGTGCGGATTATTCATCGTCATGTCAAACCTAGCAACATTCTATTAGATAAAGAGATGAACCCGAAAATTTCTGATTTTTGCTTAGCAAAGTTGTGTGATTGGAAAGGAAGTGAAGTGTCTGTAACCAATCTTGTGGGGACTTAG

Network for GWHGAAZE029125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	108	382	3.70E-48
PF00069.26	Pkinase	510	583	1.70E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.532
	SRR3591706	second leaf	0.069
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.136
	SRR3591709	Stem	0.910
	SRR3591710	White floral bud	0.091
	SRR3591711	White flower	0.183
	SRR3591712	Green floral bud	0.022
	SRR3591713	Yellow flower	0.285
SRP173429	SRR8316895	Juvenile bud stage	0.093
	SRR8316896	Juvenile bud stage	0.247
	SRR8316897	Juvenile bud stage	0.756
	SRR8316894	Third green stage	0.068
	SRR8316900	Third green stage	0.076
	SRR8316901	Third green stage	0.127
	SRR8316898	Complete white stage	0.009
	SRR8316899	Complete white stage	0.218
	SRR8316903	Complete white stage	0.048
	SRR8316902	Silver flowering stage	0.042
	SRR8316904	Silver flowering stage	0.021
	SRR8316905	Silver flowering stage	0.063
	SRR8316906	Gold flowering stage	0.294
	SRR8316907	Gold flowering stage	0.279
	SRR8316908	Gold flowering stage	0.441
SRP132670	SRR6706286	Control	0.194
	SRR6706287	Light intensity 50%	0.151
	SRR6706288	Light intensity 20%	0.077
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.070
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.107
	CNS0095595	Whole white alabastrum(diploid) 2	0.041
	CNS0095596	Whole white alabastrum(diploid) 3	0.016
	CNS0095597	Whole white alabastrum(diploid) 4	0.028
	CNS0095598	Silvery flower (diploied) 1	0.065
	CNS0095599	Silvery flower (diploied) 2	0.157
	CNS0095600	Silvery flower (diploied) 3	0.293
	CNS0095601	Golden flower (diploid) 1	0.291
	CNS0095602	Golden flower (diploid) 2	0.700
	CNS0095603	Golden flower (diploid) 3	0.400
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.102
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.110
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.117
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.118
	CNS0095611	Silvery flower (tetraploid) 2	0.095
	CNS0095612	Silvery flower (tetraploid) 3	0.147
	CNS0095613	Golden flower (tetraploid) 1	0.052
	CNS0095614	Golden flower (tetraploid) 2	0.272
	CNS0095615	Golden flower (tetraploid) 3	0.040
CRA001975	CRR073297	Stem 1	0.113
	CRR073298	Stem 2	0.013
	CRR073299	Stem 3	0.006
	CRR073300	Leaf 1	0.379
	CRR073301	Leaf 2	0.002
	CRR073302	Leaf 3	0.116
	CRR073303	Juvenile bud 1	0.011
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.127
	CRR073306	Third green 1	0.129
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.044
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.162
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.181
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.113
	CRR073318	Tawny withering 1	3.215
	CRR073319	Tawny withering 2	2.906
	CRR073320	Tawny withering 3	0.040