Detail information of GWHGAAZE029136


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284540.16.2435E-142PREDICTED: F-box protein At1g55000 [Vitis vinifera]
Swissprottr|Q9FZ32|FB60_ARATH5E-100F-box protein At1g55000
trEMBLtr|F6HZ09|F6HZ09_VITVI2E-142Putative uncharacterized protein {ECO:0000313|EMBL:CCB59923.1}
TAIR10AT1G55000.31E-73peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene84984138508663+
GWHAAZE00000009mRNA84984138508663+
GWHAAZE00000009exon84984138498844+
GWHAAZE00000009exon85082898508663+
GWHAAZE00000009CDS84984138498844+
GWHAAZE00000009CDS85082898508663+
Transcript Sequence

Network for GWHGAAZE029136

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34875.40E-07
PF01476.21LysM1291692.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf28.943
SRR3591706second leaf25.989
SRR3591707mature leaf31.598
SRR3591708Shoot apex23.190
SRR3591709Stem34.578
SRR3591710White floral bud28.569
SRR3591711White flower21.131
SRR3591712Green floral bud26.851
SRR3591713Yellow flower23.838
SRP173429 SRR8316895Juvenile bud stage 13.013
SRR8316896Juvenile bud stage 17.500
SRR8316897Juvenile bud stage 8.113
SRR8316894Third green stage 7.963
SRR8316900Third green stage 21.418
SRR8316901Third green stage 22.881
SRR8316898Complete white stage 11.777
SRR8316899Complete white stage 34.817
SRR8316903Complete white stage 14.902
SRR8316902Silver flowering stage11.024
SRR8316904Silver flowering stage13.224
SRR8316905Silver flowering stage6.142
SRR8316906Gold flowering stage 23.821
SRR8316907Gold flowering stage 20.700
SRR8316908Gold flowering stage 21.253
SRP132670SRR6706286Control22.042
SRR6706287Light intensity 50%21.538
SRR6706288Light intensity 20%19.792
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.151
CNS0095593Slightly white alabastrum(diploid) 214.695
CNS0095594Slightly white alabastrum(diploid) 316.428
CNS0095595Whole white alabastrum(diploid) 221.534
CNS0095596Whole white alabastrum(diploid) 321.474
CNS0095597Whole white alabastrum(diploid) 425.035
CNS0095598Silvery flower (diploied) 115.295
CNS0095599Silvery flower (diploied) 212.123
CNS0095600Silvery flower (diploied) 331.031
CNS0095601Golden flower (diploid) 116.433
CNS0095602Golden flower (diploid) 222.420
CNS0095603Golden flower (diploid) 319.860
CNS0095604Slightly white alabastrum(tetraploid) 126.568
CNS0095605Slightly white alabastrum(tetraploid) 229.238
CNS0095606Slightly white alabastrum(tetraploid) 332.770
CNS0095607Whole white alabastrum(tetraploid) 129.728
CNS0095608Whole white alabastrum(tetraploid) 228.578
CNS0095609Whole white alabastrum(tetraploid) 335.079
CNS0095610Silvery flower (tetraploid) 139.633
CNS0095611Silvery flower (tetraploid) 230.823
CNS0095612Silvery flower (tetraploid) 332.724
CNS0095613Golden flower (tetraploid) 124.230
CNS0095614Golden flower (tetraploid) 235.196
CNS0095615Golden flower (tetraploid) 337.933
CRA001975CRR073297Stem 129.176
CRR073298Stem 227.372
CRR073299Stem 334.280
CRR073300Leaf 136.498
CRR073301Leaf 231.749
CRR073302Leaf 328.491
CRR073303Juvenile bud 133.913
CRR073304Juvenile bud 228.226
CRR073305Juvenile bud 333.865
CRR073306Third green 128.593
CRR073307Third green 233.645
CRR073308Third green 329.693
CRR073309Second white 124.398
CRR073310Second white 219.614
CRR073311Second white 319.061
CRR073312Silver flowering 117.974
CRR073313Silver flowering 222.750
CRR073314Silver flowering 317.057
CRR073315Gold flowering 136.126
CRR073316Gold flowering 239.196
CRR073317Gold flowering 335.996
CRR073318Tawny withering 129.130
CRR073319Tawny withering 219.395
CRR073320Tawny withering 320.698