Gene detail

Detail information of GWHGAAZE029137

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011092040.1	PREDICTED: probable linoleate 9S-lipoxygenase 5 isoform X4 [Sesamum indicum]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|A0A022RQW3\|A0A022RQW3_ERYGU	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G55020.1	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8532639	8541172	+
GWHAAZE00000009	mRNA	8532639	8541172	+
GWHAAZE00000009	exon	8532639	8532972	+
GWHAAZE00000009	exon	8535967	8536256	+
GWHAAZE00000009	exon	8536912	8537149	+
GWHAAZE00000009	exon	8537737	8538078	+
GWHAAZE00000009	exon	8538434	8538519	+
GWHAAZE00000009	exon	8538755	8538862	+
GWHAAZE00000009	exon	8538951	8539252	+
GWHAAZE00000009	exon	8539797	8540060	+
GWHAAZE00000009	exon	8540416	8541172	+
GWHAAZE00000009	five_prime_UTR	8532639	8532743	+
GWHAAZE00000009	CDS	8532744	8532972	+
GWHAAZE00000009	CDS	8535967	8536256	+
GWHAAZE00000009	CDS	8536912	8537149	+
GWHAAZE00000009	CDS	8537737	8538078	+
GWHAAZE00000009	CDS	8538434	8538519	+
GWHAAZE00000009	CDS	8538755	8538862	+
GWHAAZE00000009	CDS	8538951	8539252	+
GWHAAZE00000009	CDS	8539797	8540060	+
GWHAAZE00000009	CDS	8540416	8541172	+

Transcript Sequence
>GWHTAAZE029171 GCCTAATCTTTCTCTCCCTTCCCTATAAATATCCCTAATTCTCTCAACTTTTTATTCATAATCCCTCACTTCTTTTAACATTTTCCCAAGAAAGTAAGAGAGAAAATGTCTAGGAAAGTTATGGATTCGTCGGCGGTTGATGAAGAAAGGAGCAAGAAAATGAGATTTGAGGAGGGGGAAGAAAGGAAAACGATTAAGGGGAAAGTAGTCTTGGTGAAGAAGAAGATTCTTGATATAAACGACGTTATAGCGTCGGCTAGGGATCGGTTCGACGAGATACTGGGTCATAAAGTCTCTTTGCAGCTCATCAGTGCTGTTAATGGTGATCCAAATGCCAAGGAATTGAGAGGGAAAATAGGGAAAGCAGCTAACTTGGAAGACTGGGTTACTACAATTGACCCTTTAACAGCAGATCATTCAACCTTCAATGTCACTTTTGAGTGGGAAGATGAAATAGGAATTCCCGGTGCGTTTCTTATTAGAAATTTTCACCACAATGAGTTCTACCTTAAGACACTCACCCTCGAAGCTGTTCCCGGTCATGGCCGCCTCCACTTCATCTGCAATTCTTGGGTTTACCCAGCCGAGTGCTACAAAAAAGACCGCGTTTTCTTCACTAATCAGACATATCTTCCCAGCCAAACACCAGGACCATTACATCACTACAGAGAAGAAGAACTAGAGAATTTGAGAGGAAGTGGGACTGGAAAGCTCGAGGAATGGGACCGTGTTTATGACTATGATGTCTATAACGATTTGGGCAATCCCGATAAGGACAACCAAGTCCGCCCTATTCTTGGAGGATCTGCTGAGTACCCTTATCCTCGTAGGGGAAGAACAGGCCGCCCAATGACAGAAACAGATCCTGACACGGAAAGCAGGCTGCCACTTTATGAGAGCTTAAAGATCTACGTCCCAAGAGACGAAAGATTTAGTCAGATGAAGATGTCAGACTTTGCCTCATACGCGCTAAAATCGATATTTCAATTCCTAGTCCCTGAATTCGAGGCTTTGTTTGACAAAACCCGAGACGAGTTTGACAAAATAGAAGATGTATTAAAGCTCTACGAAGGAAGAATCAATCTGTCAAACAGCCATTTACTCGATACTATGAGGGAACATATTCCCATTGAACTCATCAAGGAACTACTTAGAACCGATGGTGAACCGGTATTCAAATTCCCAGTGCCACAAGTCATCGAAAAGGATGAGACAGCGTGGAGTACTGACGAAGAATTTGCAAGAGAAATGCTGGCCGGAATAAACCCTGTTGTTATTCATCGTCTCCAAGAGTTCCCTCCAACGAGCAAGCTAGATCCCGAACTCTATGGCAACCAAAACAGCTCAATAACTAAAGAACATATAAGGGATAACTTAGATGGTCTAACCATAGAAGAGGCGATCAAGAACAACAGGCTATTCATATTAGACCACCATGATGCGTTAATGCCATACCTGAGGCAAATAAACACAACTGCCACAAAGATTTATGCCACAAGGACACTCTTATTCTTGGAGAATAATGGAACTTTGAGGCCATTGGCAATTGAATTAAGCTTGCCTTCAGACGAAGATCAGCTCGGAGCTGTAAGTACGGTATACACGCCAGCACATGAGGGAGCCGCAGGTACCATTTGGCAGTTGGCTAAAGCTTATGTTGCAGTGAATGACTCCGGCTATCATCAGCTCATATGTCATTGGTTGCATACTCACGCAGCAATCGAGCCATTCATTATTGCAACCAATAGGCAGCTAAGCGTACTTCACCCGATTCATAAGCTATTGCATCCTCACTTCCGCGATACGATGAACATTAATGCGCTTGCAAGGCAGACACTTATCAATGCAGGTGGGCTGCTTGAAATGACAGTTTTCCCAACAAGGTATGCCATGGAATGGTCAGCTGCCAGTTACAAGGACTGGGTTTTCCCTGAGCAAGCACTCCCTGTAGATCTCATCAAGAGAGGAATGGCGGTTGAGGACTCGAATTCTCCACATGGCCTCCGGCTACTCATTCAGGACTACCCATTTGCCGTTGATGGGCTAGAGATATGGTCAGCAATCAAAACGTGGGTTGGGGACTATTGTTCATTCTACTACAAAACTGACGAAATGGTTCAAAAAGACTACGAGGTCCAATCCTGGTGGCAAGAAGTGCGGGAAAAGGGTCATGGCGACAAAAAGCACGAGCTCTGGTGGCCTAAAGTGAATACTCGAAACGAGCTAGTAGAATCATGTACAACCATCATATGGGTTGCTTCTGCCCTCCATGCAGCTGTGAATTTCGGACAGTACCCTTATGGAGGGTACCCCCCAAACCGGCCAGCCATGAGCCGCCGCCTCTTGCCTGAGCTTGACACTCCCGATTACGATGAGCTTGAGTCAAACCCGGAAAAGGCTTACTTAAAAACAATCACAAGCCAACTCCAAAGTGTACTTGGGATTTCCCTTATTGAGATACTGTCAAGGCATTCATCTGATGAAGTGTTTCTCGGGCAGAGAGATACTGCCGAATGGACAACCGACATGGAAGCAATAAAAGCCTTTGGGAGATTTGGGAAGAAGCTTGAAGAGATCGAGAAAAGAATTGATGAGATGAATGGTGATAAGAAGAGATGGAGGAATAGAGTTGGGCCAGTCAATATGCCGTATACTTTGCTATATCCTAGCAGCGAAGTTGGACTTACTGGCAAGGGAATTCCCAATAGTGTCTCAATCTAA

Network for GWHGAAZE029137

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	80	170	3.50E-17
PF00305.20	Lipoxygenase	184	854	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.113
	SRR3591706	second leaf	13.696
	SRR3591707	mature leaf	38.165
	SRR3591708	Shoot apex	31.835
	SRR3591709	Stem	52.671
	SRR3591710	White floral bud	38.449
	SRR3591711	White flower	76.195
	SRR3591712	Green floral bud	26.063
	SRR3591713	Yellow flower	38.377
SRP173429	SRR8316895	Juvenile bud stage	25.899
	SRR8316896	Juvenile bud stage	34.378
	SRR8316897	Juvenile bud stage	22.450
	SRR8316894	Third green stage	19.855
	SRR8316900	Third green stage	42.661
	SRR8316901	Third green stage	41.709
	SRR8316898	Complete white stage	8.731
	SRR8316899	Complete white stage	41.049
	SRR8316903	Complete white stage	19.690
	SRR8316902	Silver flowering stage	26.338
	SRR8316904	Silver flowering stage	28.261
	SRR8316905	Silver flowering stage	17.015
	SRR8316906	Gold flowering stage	94.927
	SRR8316907	Gold flowering stage	76.169
	SRR8316908	Gold flowering stage	85.004
SRP132670	SRR6706286	Control	78.086
	SRR6706287	Light intensity 50%	59.028
	SRR6706288	Light intensity 20%	54.702
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.946
	CNS0095593	Slightly white alabastrum(diploid) 2	10.871
	CNS0095594	Slightly white alabastrum(diploid) 3	16.041
	CNS0095595	Whole white alabastrum(diploid) 2	8.862
	CNS0095596	Whole white alabastrum(diploid) 3	9.970
	CNS0095597	Whole white alabastrum(diploid) 4	7.422
	CNS0095598	Silvery flower (diploied) 1	55.718
	CNS0095599	Silvery flower (diploied) 2	32.683
	CNS0095600	Silvery flower (diploied) 3	40.336
	CNS0095601	Golden flower (diploid) 1	49.923
	CNS0095602	Golden flower (diploid) 2	61.300
	CNS0095603	Golden flower (diploid) 3	56.507
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.973
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.604
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.291
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.901
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.833
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.711
	CNS0095610	Silvery flower (tetraploid) 1	33.074
	CNS0095611	Silvery flower (tetraploid) 2	29.087
	CNS0095612	Silvery flower (tetraploid) 3	15.357
	CNS0095613	Golden flower (tetraploid) 1	15.953
	CNS0095614	Golden flower (tetraploid) 2	28.040
	CNS0095615	Golden flower (tetraploid) 3	14.262
CRA001975	CRR073297	Stem 1	65.375
	CRR073298	Stem 2	64.073
	CRR073299	Stem 3	56.341
	CRR073300	Leaf 1	46.719
	CRR073301	Leaf 2	54.216
	CRR073302	Leaf 3	52.850
	CRR073303	Juvenile bud 1	25.321
	CRR073304	Juvenile bud 2	22.329
	CRR073305	Juvenile bud 3	40.272
	CRR073306	Third green 1	5.597
	CRR073307	Third green 2	3.582
	CRR073308	Third green 3	9.177
	CRR073309	Second white 1	5.240
	CRR073310	Second white 2	4.576
	CRR073311	Second white 3	7.430
	CRR073312	Silver flowering 1	14.077
	CRR073313	Silver flowering 2	12.413
	CRR073314	Silver flowering 3	11.332
	CRR073315	Gold flowering 1	62.860
	CRR073316	Gold flowering 2	66.085
	CRR073317	Gold flowering 3	55.436
	CRR073318	Tawny withering 1	67.402
	CRR073319	Tawny withering 2	82.078
	CRR073320	Tawny withering 3	47.948