Gene detail

Detail information of GWHGAAZE029138

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011099164.1	1.0243E-137	PREDICTED: putative receptor-like protein kinase At5g39000 [Sesamum indicum]
COG	YP_001958461.1	8E-24	hypothetical protein Aasi_1443
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-108	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	4E-131	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	2E-96	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8543347	8546090	-
GWHAAZE00000009	mRNA	8543347	8546090	-
GWHAAZE00000009	exon	8543347	8543664	-
GWHAAZE00000009	exon	8544058	8544218	-
GWHAAZE00000009	exon	8544665	8546090	-
GWHAAZE00000009	CDS	8544665	8546090	-
GWHAAZE00000009	CDS	8544058	8544218	-
GWHAAZE00000009	CDS	8543347	8543664	-

Transcript Sequence
>GWHTAAZE029172 ATGGGCTTCCATTTTGGCATTGTCAATATGATTGCAACTGCAGTGATAATTATAATCACTATATTGAATATCATTGTCTATAAACTTCGACAACTTCGCGACGCAAACTTTGCCAAGAATTCGGACATTTCATCATCCCAACAAATAGCAGAAGCAAACCTTGGCGAGAATTTAGAAGTATTAACACCGCAACAACACCAGGAAGTGAACCTTGGCGAGGATTCAAGCATACCACCGTCGTTGAAATCAGAACAATTATGCCGTCACTTTTCACTTGCTCATATCCTATTGGCCACCAACAACTTTGACGATGCATTAATCATTGGTCAGGGTGGATTTGGGAAGGTGTACAAAGGGTTCATCGATGATGGGACAGTTACTGTTGCCATAAAGAGGTTAAGTCCTACGTCCAAACAAGGGGCACCCCAATTTTGGACAGAGGTGGAGTTGCTTTCTAAATTTCGGCACAGCCATCTTGTTTCACTAATTGGTTACTGTAACAATCGCAATGAGATGATACTTGTTTATGAGTACATGGCTCATGGATCCCTCGCGGATCATCTGTACAAACTTGGTCCGAATGGTAACAATTCTCTAACCTTGTCTTGGGTGCAGCGCGTAAAGATTTGCATTGGGGCAGCACGGGGTTTGGATTACCTTCATACCGGTACGGGTATCCATGACAGGGTCATACATCGTGACTTGAAGAGCTCAAACATTTTATTGGATGATAGCTGGGCAGCTAAGGTATCAGATTTTGGGCTGTCTAAAATTGGTCCCGCAAATCAGTCCGCCTCCGCCTCATCACATGTCAGTACCAACGTCAAAGGCACATTCGGGTATGTGGATCCAGAGTATTTGGTGACCCAGAGACTCACTCGAAAGTCTGACGTTTACTCCTTTGGTGTTGTCTTGTTAGAAGTGTTGTCTGGGAGGCGGGCTGTAGATTTAAAACGCTGTGAGGAGCAGTGGGGTCTTGCTGGATGGGCCAAAGAATGCATAAAGAAAGGAGAACTAGATCAGATTATTGACCCGAATTTGAGATGGCAAATCTTGCCAAGTTCTTTGTCAGCATTTGCGAAAATAGCAGATCAATGCTTGCATTATCGTTCGAAAAAACGCCCTACAATGGCTGAGGTGGTGGCCTCGCTTGAGTCCGTGTTGGCATTGCAAGAGAGAAGAGATTCTTCAATGTTTGAGGCGGATTTTTTGAATTTAGGAGGGACTTTTGACAGCCAAGAGAATCTGGATAATTCCTTACTAGAATCCGAGGTGAATAATGGTGGTGATGGTGAGCATCTGGGTGAAGAGATACATAATATTTTGTCATCCGGTGAGGCAAGCAATTTGCAGAAGCATGTAAGGCCTGCCAGAATGACAGCGTTCAAAAGGATGGCACGGCTGTTTTTCTTTGGGAAACCTCGAGCAAGTGAAATAAGCAACTTGGAATCCCTACGACATGACTTTGGTAGCATTAGAAGCAACTCGGAATCCCTACAATACGACTTTGGTACGCTTAGGGTTGCAACAGATAATTTCTCTGATGCTAACAAGCTCGGAAATGGTGCATTTGGAGTTGTGTTCAAGTATGTTATCATCTCTCAAAGTTTAGGTTATTTAAATGAAGCTCTTACTAAGAAATTTTCTTTCGTTGGGTGTGCAGATCCAATCAAGCGTGCAACCTTGGATTGGGAACGGCGTTATAAAATCATAAGAGGTGTTGCTCGGGGGCTTCTATATCTTCACGAAGATTCTCCCGTGCGGATTATTCATCGTCTTGTCAAACCTAGCAGCATTCTATTAGATGCAGAGTTGAACCCGAAAATTTCTGGTTTTGCCTTCGCAAAGTTGTGTGATTGGGAAGGAAGCCAAAGGCTCGCAACCAGTTTTGTGGGGACTTTGTAA

Network for GWHGAAZE029138

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	108	384	7.90E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.682
	SRR3591706	second leaf	0.464
	SRR3591707	mature leaf	0.208
	SRR3591708	Shoot apex	1.574
	SRR3591709	Stem	1.750
	SRR3591710	White floral bud	1.058
	SRR3591711	White flower	1.099
	SRR3591712	Green floral bud	0.223
	SRR3591713	Yellow flower	0.925
SRP173429	SRR8316895	Juvenile bud stage	1.285
	SRR8316896	Juvenile bud stage	1.744
	SRR8316897	Juvenile bud stage	5.651
	SRR8316894	Third green stage	0.947
	SRR8316900	Third green stage	0.661
	SRR8316901	Third green stage	0.320
	SRR8316898	Complete white stage	0.124
	SRR8316899	Complete white stage	1.315
	SRR8316903	Complete white stage	0.380
	SRR8316902	Silver flowering stage	0.083
	SRR8316904	Silver flowering stage	0.520
	SRR8316905	Silver flowering stage	0.175
	SRR8316906	Gold flowering stage	1.473
	SRR8316907	Gold flowering stage	0.382
	SRR8316908	Gold flowering stage	2.421
SRP132670	SRR6706286	Control	0.492
	SRR6706287	Light intensity 50%	0.632
	SRR6706288	Light intensity 20%	0.636
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.967
	CNS0095593	Slightly white alabastrum(diploid) 2	0.581
	CNS0095594	Slightly white alabastrum(diploid) 3	0.856
	CNS0095595	Whole white alabastrum(diploid) 2	0.867
	CNS0095596	Whole white alabastrum(diploid) 3	0.176
	CNS0095597	Whole white alabastrum(diploid) 4	0.469
	CNS0095598	Silvery flower (diploied) 1	0.755
	CNS0095599	Silvery flower (diploied) 2	1.917
	CNS0095600	Silvery flower (diploied) 3	0.742
	CNS0095601	Golden flower (diploid) 1	2.700
	CNS0095602	Golden flower (diploid) 2	1.322
	CNS0095603	Golden flower (diploid) 3	2.054
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.247
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.762
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.086
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.045
	CNS0095610	Silvery flower (tetraploid) 1	0.342
	CNS0095611	Silvery flower (tetraploid) 2	0.061
	CNS0095612	Silvery flower (tetraploid) 3	0.145
	CNS0095613	Golden flower (tetraploid) 1	0.054
	CNS0095614	Golden flower (tetraploid) 2	0.455
	CNS0095615	Golden flower (tetraploid) 3	0.054
CRA001975	CRR073297	Stem 1	0.829
	CRR073298	Stem 2	0.599
	CRR073299	Stem 3	0.278
	CRR073300	Leaf 1	0.996
	CRR073301	Leaf 2	0.785
	CRR073302	Leaf 3	0.491
	CRR073303	Juvenile bud 1	0.120
	CRR073304	Juvenile bud 2	0.048
	CRR073305	Juvenile bud 3	0.266
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.069
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.094
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.029
	CRR073314	Silver flowering 3	0.058
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.026
	CRR073317	Gold flowering 3	0.170
	CRR073318	Tawny withering 1	1.226
	CRR073319	Tawny withering 2	2.021
	CRR073320	Tawny withering 3	0.431