Detail information of GWHGAAZE029145


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284540.18.2027E-142PREDICTED: F-box protein At1g55000 [Vitis vinifera]
Swissprottr|Q9FZ32|FB60_ARATH5E-100F-box protein At1g55000
trEMBLtr|F6HZ09|F6HZ09_VITVI3E-142Putative uncharacterized protein {ECO:0000313|EMBL:CCB59923.1}
TAIR10AT1G55000.39E-74peptidoglycan-binding LysM domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000009gene86642118674510+
GWHAAZE00000009mRNA86642118674510+
GWHAAZE00000009exon86642118664642+
GWHAAZE00000009exon86741368674510+
GWHAAZE00000009CDS86642118664642+
GWHAAZE00000009CDS86741368674510+
Transcript Sequence

Network for GWHGAAZE029145

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box34876.70E-07
PF01476.21LysM1291692.30E-05
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf33.811
SRR3591706second leaf28.065
SRR3591707mature leaf35.694
SRR3591708Shoot apex24.511
SRR3591709Stem37.479
SRR3591710White floral bud33.416
SRR3591711White flower23.717
SRR3591712Green floral bud29.892
SRR3591713Yellow flower27.268
SRP173429 SRR8316895Juvenile bud stage 14.439
SRR8316896Juvenile bud stage 21.034
SRR8316897Juvenile bud stage 7.554
SRR8316894Third green stage 9.136
SRR8316900Third green stage 26.767
SRR8316901Third green stage 27.683
SRR8316898Complete white stage 13.144
SRR8316899Complete white stage 39.908
SRR8316903Complete white stage 17.978
SRR8316902Silver flowering stage12.491
SRR8316904Silver flowering stage16.472
SRR8316905Silver flowering stage7.660
SRR8316906Gold flowering stage 27.548
SRR8316907Gold flowering stage 24.967
SRR8316908Gold flowering stage 20.664
SRP132670SRR6706286Control28.099
SRR6706287Light intensity 50%26.871
SRR6706288Light intensity 20%34.152
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.524
CNS0095593Slightly white alabastrum(diploid) 217.133
CNS0095594Slightly white alabastrum(diploid) 314.491
CNS0095595Whole white alabastrum(diploid) 223.531
CNS0095596Whole white alabastrum(diploid) 325.074
CNS0095597Whole white alabastrum(diploid) 418.783
CNS0095598Silvery flower (diploied) 118.803
CNS0095599Silvery flower (diploied) 213.801
CNS0095600Silvery flower (diploied) 322.236
CNS0095601Golden flower (diploid) 117.654
CNS0095602Golden flower (diploid) 224.363
CNS0095603Golden flower (diploid) 323.254
CNS0095604Slightly white alabastrum(tetraploid) 124.545
CNS0095605Slightly white alabastrum(tetraploid) 219.862
CNS0095606Slightly white alabastrum(tetraploid) 328.172
CNS0095607Whole white alabastrum(tetraploid) 126.103
CNS0095608Whole white alabastrum(tetraploid) 219.371
CNS0095609Whole white alabastrum(tetraploid) 321.347
CNS0095610Silvery flower (tetraploid) 122.707
CNS0095611Silvery flower (tetraploid) 226.267
CNS0095612Silvery flower (tetraploid) 327.393
CNS0095613Golden flower (tetraploid) 120.618
CNS0095614Golden flower (tetraploid) 219.871
CNS0095615Golden flower (tetraploid) 318.922
CRA001975CRR073297Stem 133.481
CRR073298Stem 231.076
CRR073299Stem 338.876
CRR073300Leaf 143.246
CRR073301Leaf 237.526
CRR073302Leaf 336.532
CRR073303Juvenile bud 136.893
CRR073304Juvenile bud 233.029
CRR073305Juvenile bud 342.630
CRR073306Third green 132.802
CRR073307Third green 224.002
CRR073308Third green 320.763
CRR073309Second white 130.800
CRR073310Second white 223.499
CRR073311Second white 324.043
CRR073312Silver flowering 120.866
CRR073313Silver flowering 227.382
CRR073314Silver flowering 320.064
CRR073315Gold flowering 139.010
CRR073316Gold flowering 244.942
CRR073317Gold flowering 342.161
CRR073318Tawny withering 132.766
CRR073319Tawny withering 223.548
CRR073320Tawny withering 324.754