Gene detail

Detail information of GWHGAAZE029146

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011092040.1	PREDICTED: probable linoleate 9S-lipoxygenase 5 isoform X4 [Sesamum indicum]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|A0A022RQW3\|A0A022RQW3_ERYGU	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}
TAIR10	AT1G55020.1	lipoxygenase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8703064	8711187	+
GWHAAZE00000009	mRNA	8703064	8711187	+
GWHAAZE00000009	exon	8703064	8703397	+
GWHAAZE00000009	exon	8705995	8706284	+
GWHAAZE00000009	exon	8706934	8707171	+
GWHAAZE00000009	exon	8707605	8707664	+
GWHAAZE00000009	exon	8707741	8708082	+
GWHAAZE00000009	exon	8708432	8708517	+
GWHAAZE00000009	exon	8708753	8708860	+
GWHAAZE00000009	exon	8708949	8709250	+
GWHAAZE00000009	exon	8709818	8710081	+
GWHAAZE00000009	exon	8710431	8711187	+
GWHAAZE00000009	five_prime_UTR	8703064	8703168	+
GWHAAZE00000009	CDS	8703169	8703397	+
GWHAAZE00000009	CDS	8705995	8706284	+
GWHAAZE00000009	CDS	8706934	8707171	+
GWHAAZE00000009	CDS	8707605	8707664	+
GWHAAZE00000009	CDS	8707741	8708082	+
GWHAAZE00000009	CDS	8708432	8708517	+
GWHAAZE00000009	CDS	8708753	8708860	+
GWHAAZE00000009	CDS	8708949	8709250	+
GWHAAZE00000009	CDS	8709818	8710081	+
GWHAAZE00000009	CDS	8710431	8711187	+

Transcript Sequence
>GWHTAAZE029180 GCCTAATCTTTCTCTCCCTTCCCTATAAATATCCCCAATTCTCTCAACTTTTTATTCATAATCCATCATTTCTTTTAACATTTTCCAAAGAAAGTAAGAGAGAAAATGTCTAGGAAAGCCATGGATTTGTCAGCGGTTGATGAAGAAAGGAGCAAGAAAATGAGATTTGAGGAGGGGGAAGAAAGGAAAACGATTAAGGGGAAAGTAGTCTTGGTGAAGAAGAAGATTCTTGATATAAACGACGTTAAAGCGTCGGTTATGGATCGGTTCGATGAGATACTGGGTCATAAGGTCTCTTTGCAGCTCATCAGTGCTGTTAATGGTGATCCAAATGCCAAGGAATTGAGAGGGAAAATAGGGAAAGCAGCTAACTTGGAAGACTGGGTTACTACAATCGACCCTTTAACAGCAGATCATTCAACTTTCAATGTCACTTTCGAGTGGGAAGATGAAATAGGAATTCCCGGTGCATTTCTTATTAGAAATTTTCACCACAATGAGTTCTACCTTAAGACACTCACCCTCGAAGCTGTTCCCGGTCATGGCCGCCTCCACTTCATCTGCAATTCTTGGGTCTACCCGGCCGAGTGCTACAAAAAAGACCGCGTTTTCTTCACTAATCAGACATATCTTCCCAGCCAAACACCAGGACCATTACATCACTACAGAGAAGAAGAACTAGAGAATTTGAGAGGAAGTGGGACTGGAAAGCTCGAGGAATGGGACCGCGTTTATGACTATGATGTCTATAACGATTTGGGCAATCCCGATAAGGACAACCAAGTTCGCCCTATTCTTGGAGGATCTGCTGAGTACCCTTATCCTCGTAGGGGAAGAACAGGCCGCCCAATGACGGAAACAGATGCTAGGAGCTACACTCCCCCTGGGACCAATGCCATTTGGAACACTACTAATGGTGGTTATCCTGACACAGAAAGCAGGCTGCCACTTTATCAGAGCTTAAAGATTTACGTCCCAAGAGACGAAAGATTTAGTCAGATGAAGTTGTCAGACTTTGCCTCATACGCGCTAAAATCGATATTTCAATTCCTGGTCCCGGAATTCGAGGCTTTGTTTGACAAAACGCGAGACGAGTTTGATAAAATAGAAGATGTATTGAAGCTCTACGAAGGAAAAATCAATCTGTCTAACAGCCATTTACTCGATACTATGAGGGAACATATTCCCATTGAACTCATCAAGGAACTACTTAGAACCGATGGCGAACCAGTATTCAAATTCCCAGTGCCACAAGTCATTGAAAAGGATGAGACAGCGTGGAGTACTGATGAAGAATTTGCAAGAGAAATGCTGGCCGGAATAAACCCTGTTGTTATTCGTCGTCTCCAAGAGTTTCCTCCAATGAGCAAGCTAGATCCCGAACTCTACGGCAACCAAAACAGCTCAATAACCAAAGAACACATAAAGGATAACTTAGATGGTCTAACCATAGAAGAGGCAATCAAGAACAACAGGCTATTCATATTAGACCACCATGATGCATTAATGCCATACCTGAGGCAAATAAACACAACTGCCACAAAGATTTATGCCACAAGGACACTCTTATTCTTGGAGAATAATGGAACTTTGAGGCCATTGGCAATTGAATTAAGCTTGCCTTCAGACGAAGATCAGCTCGGAGCTGTAAGTACAGTATACACGCCAGCACATGAGGGAGCCGCAGGTACCATTTGGCAGTTGGCTAAAGCTTATGTTGCAGTGAATGACTCCGGCTATCATCAGCTCATCTGTCATTGGTTGCATACTCACGCAGCAATCGAGCCATTCATTATTGCAACCAATAGGCAGCTAAGCGTACTTCACCCGATCCATAAGCTATTGCATCCTCACTTCCGTGACACAATGAACATTAACGCACTTGCAAGGCAGACCCTTATCAATGCAGGTGGGCTGCTTGAAATGACAGTTTTCCCAACAAGATATGCCATGGAATGGTCGGCTGCCAATTACAAGGACTGGGTTTTCCCTGAACAAGCACTCCCAGCAGATCTCATCAAGAGAGGAATGGCGGTTGAGGACTCGAATTCTCCACATGGCCTCCGGCTACTCATTCAAGACTACCCATTTGCCGTTGACGGGCTTGAGATATGGTCAGCAATCAAAACGTGGGTTGGGGATTATTGTTCATTCTACTACAAAACTGACGAAATGGTTCAAAAAGACTACGAGGTCCAGTCCTGGTGGGAAGAAGTGCGGGAAAAGGGTCATGGCGACAAAAAGCACGAGCCTTGGTGGCCTAAAATGAATACTCGAATCGAGCTAGTAGAATCATGTACAACCATCATATGGGTTGCTTCTGCCCTCCATGCAGCCGTGAATTTCGGACAGTACCCTTATGGAGGGTACCCCCCAAACCGGCCAGCCATGAGCCGCCGCCTCTTGCCCGAGCCTGACACTCCCGATTACGATGAGCTCGAGTCAAACCCAGAAAAGGCTTACTTAAAAACAATCACAAGCCAACTCCAAAGTGTACTTGGGATTTCCCTCATTGAGATACTGTCAAGGCATTCATCTGATGAAGTGTTTCTCGGGCAGAGAGATACTGCCGAATGGACAACTGACATGGAAGCAATAAAAGCCTTTGGGAGATTTGGGAAGAAGCTTGAAGAGATTGAGAAAAGAATTGATGAGATGAATGGTGATAAGAAGAGATGGAGGAATAGAGTTGGGCCAGTCGATATGCCGTATACTTTGCTATATCCTAGCAGCGAAGTTGGACTTACTGGCAAGGGAATTCCCAATAGTGTCTCAATCTAA

Network for GWHGAAZE029146

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01477.24	PLAT	80	170	3.60E-17
PF00305.20	Lipoxygenase	184	874	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15718	LOX1_5	Linoleic acid metabolism	map00591

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016702	molecular_function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872	molecular_function	metal ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.427
	SRR3591706	second leaf	9.098
	SRR3591707	mature leaf	23.997
	SRR3591708	Shoot apex	18.732
	SRR3591709	Stem	30.568
	SRR3591710	White floral bud	24.778
	SRR3591711	White flower	50.777
	SRR3591712	Green floral bud	15.955
	SRR3591713	Yellow flower	21.830
SRP173429	SRR8316895	Juvenile bud stage	11.199
	SRR8316896	Juvenile bud stage	19.000
	SRR8316897	Juvenile bud stage	8.020
	SRR8316894	Third green stage	9.511
	SRR8316900	Third green stage	16.166
	SRR8316901	Third green stage	21.343
	SRR8316898	Complete white stage	10.618
	SRR8316899	Complete white stage	31.396
	SRR8316903	Complete white stage	19.767
	SRR8316902	Silver flowering stage	24.648
	SRR8316904	Silver flowering stage	28.883
	SRR8316905	Silver flowering stage	18.122
	SRR8316906	Gold flowering stage	85.511
	SRR8316907	Gold flowering stage	76.277
	SRR8316908	Gold flowering stage	57.928
SRP132670	SRR6706286	Control	37.367
	SRR6706287	Light intensity 50%	26.638
	SRR6706288	Light intensity 20%	21.870
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.780
	CNS0095593	Slightly white alabastrum(diploid) 2	5.877
	CNS0095594	Slightly white alabastrum(diploid) 3	11.115
	CNS0095595	Whole white alabastrum(diploid) 2	5.940
	CNS0095596	Whole white alabastrum(diploid) 3	5.129
	CNS0095597	Whole white alabastrum(diploid) 4	5.933
	CNS0095598	Silvery flower (diploied) 1	30.403
	CNS0095599	Silvery flower (diploied) 2	17.093
	CNS0095600	Silvery flower (diploied) 3	38.351
	CNS0095601	Golden flower (diploid) 1	28.474
	CNS0095602	Golden flower (diploid) 2	46.545
	CNS0095603	Golden flower (diploid) 3	46.283
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.032
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.168
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.995
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.747
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.985
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.136
	CNS0095610	Silvery flower (tetraploid) 1	18.850
	CNS0095611	Silvery flower (tetraploid) 2	17.244
	CNS0095612	Silvery flower (tetraploid) 3	8.496
	CNS0095613	Golden flower (tetraploid) 1	7.589
	CNS0095614	Golden flower (tetraploid) 2	17.191
	CNS0095615	Golden flower (tetraploid) 3	9.051
CRA001975	CRR073297	Stem 1	26.946
	CRR073298	Stem 2	26.340
	CRR073299	Stem 3	21.094
	CRR073300	Leaf 1	21.275
	CRR073301	Leaf 2	25.367
	CRR073302	Leaf 3	14.543
	CRR073303	Juvenile bud 1	15.991
	CRR073304	Juvenile bud 2	16.114
	CRR073305	Juvenile bud 3	24.270
	CRR073306	Third green 1	5.785
	CRR073307	Third green 2	4.903
	CRR073308	Third green 3	7.700
	CRR073309	Second white 1	3.387
	CRR073310	Second white 2	3.459
	CRR073311	Second white 3	4.814
	CRR073312	Silver flowering 1	8.605
	CRR073313	Silver flowering 2	9.984
	CRR073314	Silver flowering 3	11.690
	CRR073315	Gold flowering 1	47.171
	CRR073316	Gold flowering 2	45.091
	CRR073317	Gold flowering 3	40.191
	CRR073318	Tawny withering 1	88.746
	CRR073319	Tawny withering 2	107.696
	CRR073320	Tawny withering 3	77.084