Gene detail

Detail information of GWHGAAZE029151

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02334.1	3.2188E-126	unnamed protein product [Coffea canephora]
COG	YP_008151634.1	8E-23	hypothetical protein SCE1572_26190
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	1E-106	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|A0A068U2D1\|A0A068U2D1_COFCA	1E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02334.1}
TAIR10	AT3G51550.1	1E-91	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8746232	8749003	-
GWHAAZE00000009	mRNA	8746232	8749003	-
GWHAAZE00000009	exon	8746232	8746282	-
GWHAAZE00000009	exon	8746954	8747075	-
GWHAAZE00000009	exon	8747578	8749003	-
GWHAAZE00000009	CDS	8747578	8749003	-
GWHAAZE00000009	CDS	8746954	8747075	-
GWHAAZE00000009	CDS	8746232	8746282	-

Transcript Sequence
>GWHTAAZE029185 ATGGGCTTCCATTTTGGCCTTGTAAACATGATTGCAACTGCAGTGATAATTATAATCACTGTATTGAATATCATTGTCTATAAACTTCGACAACTTCGCGACACAAACTTTGCCAAGAATTCGGACATTTCATCATCCCAACAAATAGCAGAAGCAAACCTTGGCGAGAATTTAGAAGTATTAACACCGCAACAACACCAGGAAGTGAACCTTGGCGAGGATTCAAGCATACCACCGTCGTTGAAATTAGAACAATTATGCCGTCACTTTTCACTTGCTCAAATCCTAATGGCCACAAACAACTTTGACGATGCATTAATCATTGGTCAGGGTGGATTTGGGAAGGTGTACAAAGGGGTCATCGATGATGGGACAGTTACTGTTGCCATAAAGAGGTTAAGTCCTACGTCCAAACAAGGGGCACCCCAATTTTGGACAGAGGTGGATTTGCTTTCTAAATTTCGGCACAGCCATCTTGTTTCACTAATTGGTTACTGTAACAATCGCAATGAGATGATACTTGTTTATGAGTACATGGCTCGTGGAACCCTCGCGGATCATCTGTACAAACTTGGTCCGAATGGTAATAATTCTCTAACCTTGTCTTGGGTGCAGCGCGTAAAGATTTGCATTGGGGCAGCACGGGGTTTGGATTACCTTCATACCGGTACGGGTATCCATGATAGGGTCATTCATCGTGACTTGAAGAGCTCAAACATTCTATTGGATGATAGCGGGGCAGCTAAGGTATCAGATTTTGGGCTATCTAAAATTGGCCCCGCAAATCAGTCTGCCTCCTCCTCATCACATGTCAGTACCAACGTCAAAGGCACATTTGGGTATGTGGATCCTGAGTATTTGATGACCCACAGACTAACTCGAAAGTCTGATGTTTACTCCTTTGGCGTTGTCTTGTTAGAAGTGTTGTCCAGGAGGCGGGCTGTAGATTTAAAATGCTGTGAGGAGCAGTGGGGTCTTGCTGGATGGGCCAAAGAATGCATAAAGAAAGGAGAACTAGATCAGATTATTGACCCGAATTTGAGATGGCAAATCTTGCCAAATTCTTTGACAGCATTTGTGAAAATAGCAGATCAATGCTTGCATTATCGTTCGAAAAAACGCCCTACAATGGCTGAGGTGGTGGCCTCGCTTGAGTCCGCGTTGGCATTGCAAGAGAGAAGAGATTCTTCAATGTTTGAGGCGGATTTTTTGAATTTAGGAGGGACTTTTGACAATCAAGAGAATCTGGATAATTCCTTACTAGAATCCGAGGTGAATAATGGTGGTGATGGTGAGCATCTGGGTGAAGAGATAGATAATATTTTGTCATCTGGTGAGGCAAGCAATTTGCAGTCTCGTGTAAGGCCTGCCAGAATGACACCGTTCAAAAGGATGGTGCGGCTGTTTTTCTTTGGGAAATCTCGAGCAGCAAGTGAAATAAGCAACTTGGAATCCCTACAATATGACTTTGGTACTCTTAAGGTTGCAACAGATAATTTCTCTGATGCTAACAAGCTTGGAAATGGTGCATTTGGAGTTGTGTTCAAGATCCAATCAAGTGTGCAACCTTGGCTTGGGAACGGCGTTATAAAATCATAA

Network for GWHGAAZE029151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	108	384	6.00E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.668
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.060
	SRR3591709	Stem	0.926
	SRR3591710	White floral bud	0.197
	SRR3591711	White flower	0.262
	SRR3591712	Green floral bud	0.216
	SRR3591713	Yellow flower	0.522
SRP173429	SRR8316895	Juvenile bud stage	1.935
	SRR8316896	Juvenile bud stage	4.046
	SRR8316897	Juvenile bud stage	1.244
	SRR8316894	Third green stage	0.574
	SRR8316900	Third green stage	0.157
	SRR8316901	Third green stage	0.569
	SRR8316898	Complete white stage	0.308
	SRR8316899	Complete white stage	3.273
	SRR8316903	Complete white stage	0.424
	SRR8316902	Silver flowering stage	0.110
	SRR8316904	Silver flowering stage	0.369
	SRR8316905	Silver flowering stage	0.451
	SRR8316906	Gold flowering stage	2.646
	SRR8316907	Gold flowering stage	0.764
	SRR8316908	Gold flowering stage	1.842
SRP132670	SRR6706286	Control	1.486
	SRR6706287	Light intensity 50%	2.302
	SRR6706288	Light intensity 20%	1.133
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.173
	CNS0095593	Slightly white alabastrum(diploid) 2	2.274
	CNS0095594	Slightly white alabastrum(diploid) 3	3.192
	CNS0095595	Whole white alabastrum(diploid) 2	1.124
	CNS0095596	Whole white alabastrum(diploid) 3	0.092
	CNS0095597	Whole white alabastrum(diploid) 4	0.323
	CNS0095598	Silvery flower (diploied) 1	0.807
	CNS0095599	Silvery flower (diploied) 2	2.472
	CNS0095600	Silvery flower (diploied) 3	2.820
	CNS0095601	Golden flower (diploid) 1	3.822
	CNS0095602	Golden flower (diploid) 2	3.507
	CNS0095603	Golden flower (diploid) 3	3.849
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.021
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.033
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.005
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	0.339
	CNS0095611	Silvery flower (tetraploid) 2	0.018
	CNS0095612	Silvery flower (tetraploid) 3	0.173
	CNS0095613	Golden flower (tetraploid) 1	0.363
	CNS0095614	Golden flower (tetraploid) 2	0.328
	CNS0095615	Golden flower (tetraploid) 3	0.041
CRA001975	CRR073297	Stem 1	0.216
	CRR073298	Stem 2	0.137
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.202
	CRR073301	Leaf 2	0.243
	CRR073302	Leaf 3	0.272
	CRR073303	Juvenile bud 1	0.349
	CRR073304	Juvenile bud 2	0.027
	CRR073305	Juvenile bud 3	0.083
	CRR073306	Third green 1	0.363
	CRR073307	Third green 2	0.110
	CRR073308	Third green 3	0.513
	CRR073309	Second white 1	0.019
	CRR073310	Second white 2	0.389
	CRR073311	Second white 3	0.086
	CRR073312	Silver flowering 1	1.917
	CRR073313	Silver flowering 2	1.154
	CRR073314	Silver flowering 3	0.336
	CRR073315	Gold flowering 1	0.419
	CRR073316	Gold flowering 2	1.208
	CRR073317	Gold flowering 3	1.229
	CRR073318	Tawny withering 1	3.558
	CRR073319	Tawny withering 2	13.177
	CRR073320	Tawny withering 3	1.130