Gene detail

Detail information of GWHGAAZE029153

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010659863.1	2.15551E-59	PREDICTED: DNA polymerase zeta catalytic subunit isoform X4 [Vitis vinifera]
COG	NP_963362.1	0.000004	hypothetical protein NEQ068
Swissprot	tr\|Q766Z3\|REV3_ARATH	5E-49	DNA polymerase zeta catalytic subunit
trEMBL	tr\|A0A061F1V9\|A0A061F1V9_THECC	8E-59	DNA polymerase {ECO:0000256\|RuleBase:RU000442} (Fragment)
TAIR10	AT1G67500.1	1E-45	recovery protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000009	gene	8810884	8815846	+
GWHAAZE00000009	mRNA	8810884	8815846	+
GWHAAZE00000009	exon	8810884	8811235	+
GWHAAZE00000009	exon	8812514	8812592	+
GWHAAZE00000009	exon	8812668	8813070	+
GWHAAZE00000009	exon	8814675	8814782	+
GWHAAZE00000009	exon	8815643	8815846	+
GWHAAZE00000009	CDS	8810884	8811235	+
GWHAAZE00000009	CDS	8812514	8812592	+
GWHAAZE00000009	CDS	8812668	8813070	+
GWHAAZE00000009	CDS	8814675	8814782	+
GWHAAZE00000009	CDS	8815643	8815846	+

Transcript Sequence
>GWHTAAZE029187 ATGCTTCACATTCAGTTACTTCTCAGAGAAGGGAAAATACTGGTTGAAACGGAGTTTCGAACCCAACAGAAGCAAACAACTCCACTAAAGAAGAAGCAACTTCTTAATGTTCATTTGCACATCCGCGCCCACACCTTCGGTGCCTTTAGGAGTGAGGTTCTGAAAGAACTAGATAGAAATAGATCAGGCAACGCATCTGTAACAACCAGAGAAGACCTTATTCCCACTAAATATGCGTGGTACTTGATTATCTTGGAAGCATTAATAAGGAGACTTCCACCACCGCTCATGGTAGACCATTTCACTACACAATATGAATACCCAGCTCCCGCAAGTCCTACAGTTTCCCTGGTTCTTGTTTTTCAAGAGGATGATGATCACATCCGAGATGCACATGTCCTCGTGCGTAGTGATGCTGAAGGTGTTCAAAGGAATATTGATGGAACAACTGGTTGCAAGGTCTTGGTTTCCTCTGAAGAGAAGCACCTGTTTAACCACTTTATAAAGATCATTTCTTCTTATGATCCAGATATATTAGTAGGATGGGATATTCAAGGTGGTTCCTTTGGTTTTCTAGCTGAGAGGGCTGCATATTTTGGCATTGGTTTACTCAATAAAATATCTCGCACACCATCTCAAAGCATTGTGACTGCCATAGTTTCCAATATTCAAGACAAAGGAACAGTAAAGAATGATCTTCCGGAGACTTTAATGGCCGATTCTGTTCTAATTGAAGATGCAATAATTGAGGATGAATGGGGTCGAACCCAGGCTAGTGTTGTACATGTTGGGGATAGAGTTGTGCTCAATGTTTGGTGGTTAATGCGTGGTGAGGTTCGTAAAGGTGTACTGCCTCGGTTATTGGATGAAATACTATCAACTAGAATCATGGTGAAAAAGGCAATGAAGGAGTTGGCACCTCCACAGAAAGTCCTTAACCGGATATTTAATGCAAGACAACTTGCACTGAAGCTAATAGCAAACGTGACTCATGGTTATACGGCAGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAGCTTGCTGATAGTATTGTTCAATGTGGCCGCAGAACTCTGGAAACTGCTATTTCACTTGTAAACATGCATGATAAGTGGAAAGCCAAAGTTATATATGGTGATTACTGA

Network for GWHGAAZE029153

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0130

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03104.20	DNA_pol_B_exo1	149	232	3.00E-08
PF00136.22	DNA_pol_B	260	380	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02350	REV3L, POLZ	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0000166	molecular_function	nucleotide binding
GO:0003677	molecular_function	DNA binding
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.055
	SRR3591708	Shoot apex	0.059
	SRR3591709	Stem	0.019
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.065
	SRR3591712	Green floral bud	0.058
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.201
	SRR8316896	Juvenile bud stage	6.270
	SRR8316897	Juvenile bud stage	1.864
	SRR8316894	Third green stage	2.685
	SRR8316900	Third green stage	3.102
	SRR8316901	Third green stage	4.635
	SRR8316898	Complete white stage	2.301
	SRR8316899	Complete white stage	5.879
	SRR8316903	Complete white stage	4.346
	SRR8316902	Silver flowering stage	3.348
	SRR8316904	Silver flowering stage	6.425
	SRR8316905	Silver flowering stage	1.635
	SRR8316906	Gold flowering stage	10.034
	SRR8316907	Gold flowering stage	5.819
	SRR8316908	Gold flowering stage	5.769
SRP132670	SRR6706286	Control	1.629
	SRR6706287	Light intensity 50%	1.916
	SRR6706288	Light intensity 20%	2.038
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.477
	CNS0095593	Slightly white alabastrum(diploid) 2	2.988
	CNS0095594	Slightly white alabastrum(diploid) 3	1.377
	CNS0095595	Whole white alabastrum(diploid) 2	2.247
	CNS0095596	Whole white alabastrum(diploid) 3	1.049
	CNS0095597	Whole white alabastrum(diploid) 4	1.759
	CNS0095598	Silvery flower (diploied) 1	2.974
	CNS0095599	Silvery flower (diploied) 2	2.089
	CNS0095600	Silvery flower (diploied) 3	1.957
	CNS0095601	Golden flower (diploid) 1	2.551
	CNS0095602	Golden flower (diploid) 2	2.759
	CNS0095603	Golden flower (diploid) 3	2.365
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.124
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.149
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.748
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.118
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.277
	CNS0095610	Silvery flower (tetraploid) 1	0.163
	CNS0095611	Silvery flower (tetraploid) 2	0.392
	CNS0095612	Silvery flower (tetraploid) 3	0.525
	CNS0095613	Golden flower (tetraploid) 1	0.295
	CNS0095614	Golden flower (tetraploid) 2	0.272
	CNS0095615	Golden flower (tetraploid) 3	0.314
CRA001975	CRR073297	Stem 1	3.278
	CRR073298	Stem 2	2.416
	CRR073299	Stem 3	0.616
	CRR073300	Leaf 1	3.919
	CRR073301	Leaf 2	2.901
	CRR073302	Leaf 3	0.385
	CRR073303	Juvenile bud 1	0.182
	CRR073304	Juvenile bud 2	0.213
	CRR073305	Juvenile bud 3	0.258
	CRR073306	Third green 1	0.098
	CRR073307	Third green 2	0.096
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.366
	CRR073310	Second white 2	0.362
	CRR073311	Second white 3	0.163
	CRR073312	Silver flowering 1	0.056
	CRR073313	Silver flowering 2	0.190
	CRR073314	Silver flowering 3	0.915
	CRR073315	Gold flowering 1	0.018
	CRR073316	Gold flowering 2	0.643
	CRR073317	Gold flowering 3	0.119
	CRR073318	Tawny withering 1	0.609
	CRR073319	Tawny withering 2	1.325
	CRR073320	Tawny withering 3	0.688